Strain identifier
BacDive ID: 8132
Type strain:
Species: Acinetobacter gerneri
Strain Designation: 9AO1, 9A01
Strain history: CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 9A01
NCBI tax ID(s): 1120926 (strain), 202952 (species)
General
@ref: 5642
BacDive-ID: 8132
DSM-Number: 14967
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative
description: Acinetobacter gerneri 9AO1 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Wastewater treatment plant.
NCBI tax id
NCBI tax id | Matching level |
---|---|
202952 | species |
1120926 | strain |
strain history
@ref | history |
---|---|
5642 | <- P. Kämpfer; 9AO1 <- G. Knight |
42151 | 2002, P. Kämpfer, Univ., Giessen, Germany: strain 9A01 |
119608 | CIP <- 2002, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 9A01 |
doi: 10.13145/bacdive8132.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter gerneri
- full scientific name: Acinetobacter gerneri Carr et al. 2003
@ref: 5642
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter gerneri
full scientific name: Acinetobacter gerneri Carr et al. 2003
strain designation: 9AO1, 9A01
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.996 | ||
119608 | negative | oval-shaped | no |
colony morphology
- @ref: 119608
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
66793 | EM_DSM_14967_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_14967_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_14967_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_14967_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_14967_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5642 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
5642 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
42151 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
119608 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5642 | positive | growth | 30 | mesophilic |
42151 | positive | growth | 30 | mesophilic |
119608 | positive | growth | 10-41 | |
119608 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119608
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.973 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
119608 | NaCl | positive | growth | 0-2 % |
119608 | NaCl | no | growth | 4 % |
119608 | NaCl | no | growth | 6 % |
119608 | NaCl | no | growth | 8 % |
119608 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
119608 | 17632 | nitrate | - | reduction |
119608 | 16301 | nitrite | - | reduction |
119608 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 119608
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
119608 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68369 | 35581 | indole | - | ||
119608 | 15688 | acetoin | - | ||
119608 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
119608 | oxidase | - | |
119608 | beta-galactosidase | - | 3.2.1.23 |
119608 | gelatinase | - | |
119608 | catalase | + | 1.11.1.6 |
119608 | gamma-glutamyltransferase | + | 2.3.2.2 |
119608 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119608 | - | - | + | + | + | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5642 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119608 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | + | - | - | + | + | + | - | + | - | + | + | + | - | - | - | + | - | + | + | + | - | + | + | + | - | - | - | + | - | - | + | - | + | + | + | + | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
5642 | Wastewater treatment plant | Victoria | Australia | AUS | Australia and Oceania | |
119608 | Environment, Bendigo waste water treatment plant | Victoria | Australia | AUS | Australia and Oceania | 1991 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Wastewater |
#Engineered | #Waste | #Water treatment plant |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
5642 | 1 | Risk group (German classification) |
119608 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acinetobacter gerneri strain DSM14967 16S ribosomal RNA gene, partial sequence | EF611410 | 453 | ena | 202952 |
20218 | Acinetobacter gerneri genomic DNA containing 16S-23S IGS, strain DSM 14967, direct sequence All | HE651864 | 659 | ena | 202952 |
20218 | Acinetobacter gerneri 16S rRNA gene, strain DSM 14967 | HE651926 | 1530 | ena | 202952 |
5642 | Acinetobacter gerneri 16S ribosomal RNA gene, partial sequence | AF509829 | 1325 | ena | 202952 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 | GCA_000368565 | scaffold | ncbi | 1120926 |
66792 | Acinetobacter gerneri DSM 14967 = CIP 107464 = MTCC 9824 | GCA_000430245 | contig | ncbi | 1120926 |
66792 | Acinetobacter gerneri DSM 14967 = CIP 107464 | 1120926.3 | wgs | patric | 1120926 |
66792 | Acinetobacter gerneri DSM 14967 | 2565956694 | draft | img | 1120926 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 91.971 | no |
flagellated | no | 94.16 | no |
gram-positive | no | 97.575 | no |
anaerobic | no | 97.807 | no |
aerobic | yes | 89.925 | no |
halophile | no | 90.157 | no |
spore-forming | no | 96.657 | no |
thermophile | no | 99.953 | yes |
glucose-util | no | 84.639 | yes |
glucose-ferment | no | 90.969 | yes |
External links
@ref: 5642
culture collection no.: DSM 14967, CIP 107464, CCM 7197
straininfo link
- @ref: 77538
- straininfo: 113568
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12892111 | Seven novel species of Acinetobacter isolated from activated sludge. | Carr EL, Kampfer P, Patel BKC, Gurtler V, Seviour RJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.02486-0 | 2003 | Acinetobacter/*classification/genetics/*isolation & purification, Base Sequence, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, In Situ Hybridization, Fluorescence, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/*microbiology, Terminology as Topic, Victoria | Genetics |
Phylogeny | 33591460 | Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions. | Pulami D, Schauss T, Eisenberg T, Blom J, Schwengers O, Bender JK, Wilharm G, Kampfer P, Glaeser SP | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01517-7 | 2021 | *Acinetobacter/genetics, Anaerobiosis, Bacterial Typing Techniques, Base Composition, *Biofuels, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5642 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14967) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14967 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42151 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4902 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
77538 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID113568.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119608 | Curators of the CIP | Collection of Institut Pasteur (CIP 107464) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107464 |