Strain identifier
BacDive ID: 8089
Type strain: 
Species: Acinetobacter johnsonii
Strain Designation: ES2-W2b2
Strain history: <- European Space Agency, Noordwijk, Netherlands; ES2-W2b2 <- P. Rettberg and S. Barczyk, DLR, Köln, Germany
NCBI tax ID(s): 40214 (species)
General
@ref: 16984
BacDive-ID: 8089
DSM-Number: 30618
keywords: genome sequence, Bacteria, mesophilic
description: Acinetobacter johnsonii ES2-W2b2 is a mesophilic bacterium that was isolated from spacecraft-associated clean room class ISO 8, Herschel Space Observatory.
NCBI tax id
- NCBI tax id: 40214
- Matching level: species
strain history
- @ref: 16984
- history: <- European Space Agency, Noordwijk, Netherlands; ES2-W2b2 <- P. Rettberg and S. Barczyk, DLR, Köln, Germany
doi: 10.13145/bacdive8089.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter johnsonii
- full scientific name: Acinetobacter johnsonii Bouvet and Grimont 1986
@ref: 16984
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter johnsonii
full scientific name: Acinetobacter johnsonii Bouvet and Grimont 1986
strain designation: ES2-W2b2
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.193 | |
| 69480 | 99.887 | negative |
Culture and growth conditions
culture medium
- @ref: 16984
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 16984
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.995 |
Isolation, sampling and environmental information
isolation
- @ref: 16984
- sample type: spacecraft-associated clean room class ISO 8, Herschel Space Observatory
- geographic location: Noordwijk, European Space Research and Technology Centre
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 16984
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Acinetobacter johnsonii strain FDAARGOS_1092
- accession: 40214.176
- assembly level: complete
- database: patric
- NCBI tax ID: 40214
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.479 | no |
| anaerobic | no | 98.395 | no |
| halophile | no | 84.03 | no |
| spore-forming | no | 97.074 | no |
| glucose-util | no | 89.36 | no |
| aerobic | yes | 93.631 | no |
| flagellated | no | 95.264 | no |
| motile | no | 92.433 | no |
| thermophile | no | 99.908 | no |
| glucose-ferment | no | 91.049 | no |
External links
@ref: 16984
culture collection no.: DSM 30618
straininfo link
- @ref: 77516
- straininfo: 406038
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16984 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30618) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30618 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 77516 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406038.1 | StrainInfo: A central database for resolving microbial strain identifiers |