Strain identifier

BacDive ID: 8051

Type strain: Yes

Species: Allocatelliglobosispora scoriae

Strain Designation: Sco-B14

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 643052 (species)

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General

@ref: 16410

BacDive-ID: 8051

DSM-Number: 45362

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Allocatelliglobosispora scoriae Sco-B14 is an aerobe, spore-forming, mesophilic bacterium that was isolated from volcanic ash .

NCBI tax id

  • NCBI tax id: 643052
  • Matching level: species

strain history

@refhistory
16410<- S. D. Lee; Sco-B14
67771<- SD Lee, Cheju Univ.

doi: 10.13145/bacdive8051.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Allocatelliglobosispora
  • species: Allocatelliglobosispora scoriae
  • full scientific name: Allocatelliglobosispora scoriae Lee and Lee 2011

@ref: 16410

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Allocatelliglobosispora

species: Allocatelliglobosispora scoriae

full scientific name: Allocatelliglobosispora scoriae Lee and Lee 2011

strain designation: Sco-B14

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
29761positiveno
67771positive
69480positive100

pigmentation

  • @ref: 29761
  • production: yes

multimedia

  • @ref: 16410
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45362.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16410ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
16410GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16410positivegrowth28mesophilic
29761positivegrowth20-30
29761positiveoptimum30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
29761positivegrowth7.1-8.1
29761positiveoptimum7.1

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29761aerobe
67771aerobe

spore formation

@refspore formationconfidence
29761yes
69481yes96
69480yes99.447

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2976130089acetate+carbon source
2976122599arabinose+carbon source
2976116947citrate+carbon source
2976116634raffinose+carbon source
2976117151xylitol+carbon source
297614853esculin+hydrolysis

enzymes

  • @ref: 29761
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16410volcanic ash (scoria)JejuRepublic of KoreaKORAsia
67771From volcanic ash (Scoria)JejuRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Dust
#Environmental#Terrestrial#Volcanic

taxonmaps

  • @ref: 69479
  • File name: preview.99_177850.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_7736;97_85527;98_116139;99_177850&stattab=map
  • Last taxonomy: Allocatelliglobosispora scoriae subclade
  • 16S sequence: FN386736
  • Sequence Identity:
  • Total samples: 17728
  • soil counts: 13934
  • aquatic counts: 870
  • animal counts: 771
  • plant counts: 2153

Safety information

risk assessment

  • @ref: 16410
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16410
  • description: Allocatelliglobosispora scoriae partial 16S rRNA gene, type strain Sco-B14T
  • accession: FN386736
  • length: 1424
  • database: ena
  • NCBI tax ID: 643052

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Allocatelliglobosispora scoriae DSM 45362GCA_014204945contigncbi643052
66792Allocatelliglobosispora scoriae strain DSM 45362643052.3wgspatric643052
66792Allocatelliglobosispora scoriae DSM 453622870638204draftimg643052

GC content

@refGC-contentmethod
1641070.1high performance liquid chromatography (HPLC)
2976170.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes96no
gram-positiveyes87.391yes
anaerobicno99.501no
halophileno96.467no
spore-formingyes94.989yes
glucose-utilyes88.413no
thermophileno99.367yes
flagellatedno97.827yes
aerobicyes94.893no
motileno95.73yes
glucose-fermentno90.263no

External links

@ref: 16410

culture collection no.: DSM 45362, KCTC 19661

straininfo link

  • @ref: 77479
  • straininfo: 398084

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20207801Allocatelliglobosispora scoriae gen. nov., sp. nov., isolated from volcanic ash.Lee DW, Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.020313-02010Bacterial Typing Techniques, Carbohydrates/analysis, DNA, Bacterial/genetics, Lipids/analysis, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Pigments, Biological/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis, *Volcanic EruptionsGenetics
Phylogeny30444473Allorhizocola rhizosphaerae gen. nov., sp. nov., a new member of Micromonosporaceae isolated from rhizosphere soil of the plant Calligonum mongolicum.Sun Y, Jiang ZM, Zhao LL, Su J, Yu LY, Tian YQ, Zhang YQInt J Syst Evol Microbiol10.1099/ijsem.0.0031142018Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Micromonosporaceae/*classification/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, Polygonaceae/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16410Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45362)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45362
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29761Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2614228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77479Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398084.1StrainInfo: A central database for resolving microbial strain identifiers