Strain identifier

BacDive ID: 8042

Type strain: Yes

Species: Pseudosporangium ferrugineum

Strain Designation: 3-44-a(19)

Culture col. no.: DSM 45348, BCC 72027, JCM 14710, MTCC 9007

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General

@ref: 16342

BacDive-ID: 8042

DSM-Number: 45348

keywords: spore-forming, aerobe, Bacteria, 16S sequence, genome sequence, mesophilic, gram-positive

description: Pseudosporangium ferrugineum 3-44-a is an aerobe, spore-forming, mesophilic bacterium that was isolated from sandy soil at a forest waterfall.

strain history: <- JCM/RIKEN <- I. Ara and T. Kudo; 3-44-a(19)

doi: 10.13145/bacdive8042.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Pseudosporangium
  • species: Pseudosporangium ferrugineum
  • full scientific name: Pseudosporangium ferrugineum Ara et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Actinoplanes ferrugineus

@ref: 16342

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Pseudosporangium

species: Pseudosporangium ferrugineum

full scientific name: Pseudosporangium ferrugineum Ara et al. 2008

strain designation: 3-44-a(19)

type strain: yes

Morphology

cell morphology

  • @ref: 32555
  • gram stain: positive

multimedia

  • @ref: 16342
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45348.jpg
  • caption: Medium 535 28°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

pigmentation

  • @ref: 32555
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16342
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

@refgrowthtypetemperaturerange
16342positivegrowth28mesophilic
32555positivegrowth20-37

culture pH

  • @ref: 32555
  • ability: positive
  • type: growth
  • pH: 05-09

Physiology and metabolism

oxygen tolerance

  • @ref: 32555
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32555
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3255522599arabinose+carbon source
3255517057cellobiose+carbon source
3255517234glucose+carbon source
3255517306maltose+carbon source
3255529864mannitol+carbon source
3255537684mannose+carbon source
3255516634raffinose+carbon source
3255526546rhamnose+carbon source
3255517992sucrose+carbon source
3255527082trehalose+carbon source
3255517151xylitol+carbon source
3255518222xylose+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 16342
  • sample type: sandy soil at a forest waterfall
  • geographic location: Chokoria, Cox's Bazar
  • country: Bangladesh
  • origin.country: BGD
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 16342
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16342
  • description: Pseudosporangium ferrugineum gene for 16S rRNA, partial sequence
  • accession: AB302183
  • length: 1513
  • database: ena
  • NCBI tax ID: 439699

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudosporangium ferrugineum DSM 45348GCA_003002065scaffoldncbi439699
66792Pseudosporangium ferrugineum strain DSM 45348439699.3wgspatric439699
66792Pseudosporangium ferrugineum DSM 453482728369278permanentimg439699

GC content

  • @ref: 16342
  • GC-content: 73.6

External links

@ref: 16342

culture collection no.: DSM 45348, BCC 72027, JCM 14710, MTCC 9007

straininfo link

@refpassport
20218http://www.straininfo.net/strains/833432
20218http://www.straininfo.net/strains/833433

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16342Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45348)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45348
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2877310.1099/ijs.0.65680-0
32555Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28773
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)