Strain identifier

BacDive ID: 8041

Type strain: Yes

Species: Krasilnikovia cinnamomea

Strain Designation: 3-54(41)

Strain history: I. Ara 3-54(41).

NCBI tax ID(s): 349313 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 15465

BacDive-ID: 8041

DSM-Number: 45162

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Krasilnikovia cinnamomea 3-54 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from sandy soil.

NCBI tax id

  • NCBI tax id: 349313
  • Matching level: species

strain history

@refhistory
15465<- JCM/RIKEN <- I. Ara; 3-54(41)
67770I. Ara 3-54(41).

doi: 10.13145/bacdive8041.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Krasilnikovia
  • species: Krasilnikovia cinnamomea
  • full scientific name: Krasilnikovia cinnamomea corrig. Ara and Kudo 2007

  • synonyms

    • @ref: 20215
    • synonym: Krasilnikovia cinnamonea

@ref: 15465

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Krasilnikovia

species: Krasilnikovia cinnamomea

full scientific name: Krasilnikovia cinnamomea Ara and Kudo 2007

strain designation: 3-54(41)

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

multimedia

  • @ref: 15465
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45162.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15465GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
15465N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf

culture temp

@refgrowthtypetemperaturerange
15465positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes99
69480yes99.446

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6)

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
15465sandy soilBangladeshBGDAsia
67770Sandy soil at a forest-side waterfallBangladeshBGDAsiaChokoria, Cox's Bazar

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 15465
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15465
  • description: Krasilnikovia cinnamomea gene for 16S rRNA, partial sequence, strain: 3-54(41)
  • accession: AB236956
  • length: 1511
  • database: ena
  • NCBI tax ID: 349313

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Krasilnikovia cinnamomea strain DSM 45162349313.3wgspatric349313
66792Krasilnikovia cinnamomea DSM 451622806310498draftimg349313
67770Krasilnikovia cinnamomea DSM 45162GCA_004217545contigncbi349313

GC content

@refGC-contentmethod
1546571
6777071high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
gram-positiveyes86.008no
anaerobicno97.914no
halophileno95.877no
spore-formingyes93.262no
glucose-utilyes88.371no
motileyes57.707no
flagellatedno88.491no
thermophileno98.229yes
aerobicyes84.291no
glucose-fermentno91.716no

External links

@ref: 15465

culture collection no.: DSM 45162, JCM 13252, MTCC 8094, BCRC 16961

straininfo link

  • @ref: 77469
  • straininfo: 319377

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15465Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45162)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45162
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77469Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID319377.1StrainInfo: A central database for resolving microbial strain identifiers