Strain identifier

BacDive ID: 8033

Type strain: Yes

Species: Micromonospora qiuiae

Strain Designation: RtIII47

Culture col. no.: DSM 45781, CGMCC 4.5826, NBRC 106684

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18199

BacDive-ID: 8033

DSM-Number: 45781

keywords: mesophilic, spore-forming, aerobe, Bacteria, 16S sequence, gram-positive

description: Micromonospora qiuiae RtIII47 is an aerobe, spore-forming, mesophilic bacterium that was isolated from mangrove soil.

strain history: <- J. Nakagawa, NBRC; NBRC 106684

doi: 10.13145/bacdive8033.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora qiuiae
  • full scientific name: Micromonospora qiuiae (Xi et al. 2012) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Verrucosispora qiuiae

@ref: 18199

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora qiuiae

full scientific name: Micromonospora qiuiae (Xi et al. 2012) Nouioui et al. 2018

strain designation: RtIII47

type strain: yes

Morphology

cell morphology

  • @ref: 30340
  • gram stain: positive

pigmentation

  • @ref: 30340
  • production: no

Culture and growth conditions

culture medium

  • @ref: 18199
  • name: GPHF-MEDIUM (DSMZ Medium 553)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf

culture temp

  • @ref: 18199
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 30340
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30340
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30340NaClpositivegrowth0-10 %
30340NaClpositiveoptimum2.50 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3034022599arabinose+carbon source
3034028757fructose+carbon source
3034028260galactose+carbon source
3034017234glucose+carbon source
3034029864mannitol+carbon source
3034017268myo-inositol+carbon source
3034026546rhamnose+carbon source
3034033942ribose+carbon source
3034017992sucrose+carbon source
3034027082trehalose+carbon source
3034018222xylose+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 18199
  • sample type: mangrove soil
  • geographic location: Hainan Province, Sanya
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 18199
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18199
  • description: Verrucosispora qiuiae strain RtIII47 16S ribosomal RNA gene, partial sequence
  • accession: EU427445
  • length: 1457
  • database: ena
  • NCBI tax ID: 502268

GC content

@refGC-content
1819972.0
3034072

External links

@ref: 18199

culture collection no.: DSM 45781, CGMCC 4.5826, NBRC 106684

straininfo link

@refpassport
20218http://www.straininfo.net/strains/872122
20218http://www.straininfo.net/strains/872123

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18199Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45781)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45781
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2668110.1099/ijs.0.033787-0
30340Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26681