Archive BacDiveID:10.13145/bacdive8032.20230509.8.1

Strain identifier

BacDive ID: 8032

Type strain:

Species: Micromonospora maris

Strain Designation: AB-18-032

Strain history: DSM 45365 <-- H.-P. Fiedler; Univ. Tübingen, Germany; AB-18-032 <-- M. Goodfellow; Newcastle Univ., UK <-- A. T. Bull.

NCBI tax ID(s): 1003110 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 16364

BacDive-ID: 8032

DSM-Number: 45365

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Micromonospora maris AB-18-032 is a mesophilic bacterium that was isolated from deep-sea sediment.

NCBI tax id

NCBI tax id: 1003110
Matching level: species

strain history

@ref	history
16364	<- H.-P. Fiedler, Univ. Tübingen; AB-18-032 <- M. Goodfellow <- A. T. Bull
67770	DSM 45365 <-- H.-P. Fiedler; Univ. Tübingen, Germany; AB-18-032 <-- M. Goodfellow; Newcastle Univ., UK <-- A. T. Bull.

doi: 10.13145/bacdive8032.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micromonosporales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora maris
full scientific name: Micromonospora maris (Goodfellow et al. 2012) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Verrucosispora maris

@ref: 16364

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora maris

full scientific name: Micromonospora maris (Goodfellow et al. 2012) Nouioui et al. 2018

strain designation: AB-18-032

type strain: yes

Morphology

multimedia

@ref: 16364
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45365.jpg
caption: Medium 65 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
16364	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16364	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://mediadive.dsmz.de/medium/252	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
16364	GPHF-MEDIUM (DSMZ Medium 553)	yes	https://mediadive.dsmz.de/medium/553	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
16364	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

compound production

@ref	compound
16364	abyssomicins
16364	proximicin A

observation

@ref: 67770
observation: quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)

metabolite production

@ref	metabolite	production
67770	abyssomicin B	yes
67770	abyssomicin C	yes
67770	abyssomicin D	yes
67770	abyssomicin G	yes
67770	abyssomicin H	yes
67770	atrop-abyssomicin C	yes
67770	proximicin A	yes

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
16364	deep-sea sediment	Sea of Japan (-289m)	Japan	JPN	Asia
67770	Sediment from the Sea of Japan at a depth of 289 m

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

taxonmaps

@ref: 69479
File name: preview.99_4596.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_2781;98_3452;99_4596&stattab=map
Last taxonomy: Micromonospora
16S sequence: AY528866
Sequence Identity:
Total samples: 449
soil counts: 308
aquatic counts: 47
animal counts: 71
plant counts: 23

Safety information

risk assessment

@ref: 16364
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 16364
description: Verrucosispora maris AB-18-032 16S ribosomal RNA gene, partial sequence
accession: AY528866
length: 1440
database: ena
NCBI tax ID: 263358

Genome sequences

@ref: 66792
description: Micromonospora maris AB-18-032
accession: GCA_000204155
assembly level: complete
database: ncbi
NCBI tax ID: 263358

GC content

@ref	GC-content	method
16364	70.9	sequence analysis
16364	69.5	fluorimetric
67770	70.9

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	93.844	no
flagellated	no	97.3	no
gram-positive	yes	90.516	no
anaerobic	no	99.05	no
aerobic	yes	92.545	no
halophile	no	94.226	no
spore-forming	yes	95.976	no
glucose-util	yes	88.31	no
thermophile	no	98.541	no
glucose-ferment	no	91.211	no

External links

@ref: 16364

culture collection no.: DSM 45365, DSM 15899, JCM 31040, NBRC 109089, NRRL B-24793

straininfo link

@ref: 77462
straininfo: 400183

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	18503194	Proximicin A, B and C, novel aminofuran antibiotic and anticancer compounds isolated from marine strains of the actinomycete Verrucosispora.	Fiedler HP, Bruntner C, Riedlinger J, Bull AT, Knutsen G, Goodfellow M, Jones A, Maldonado L, Pathom-aree W, Beil W, Schneider K, Keller S, Sussmuth RD	J Antibiot (Tokyo)	10.1038/ja.2008.125	2008	Actinobacteria/chemistry/classification/metabolism, Anti-Bacterial Agents/biosynthesis/isolation & purification/pharmacology, Antibiotics, Antineoplastic/biosynthesis/isolation & purification/pharmacology, Bacteria/drug effects, Cell Line, Tumor, Chemical Phenomena, Chemistry, Physical, Chromatography, High Pressure Liquid, Fermentation, Humans, Microbial Sensitivity Tests, Netropsin/analogs & derivatives/biosynthesis/isolation & purification/pharmacology, Spectrophotometry, Ultraviolet	Enzymology
Genetics	21551311	Genome sequence of the abyssomicin- and proximicin-producing marine actinomycete Verrucosispora maris AB-18-032.	Roh H, Uguru GC, Ko HJ, Kim S, Kim BY, Goodfellow M, Bull AT, Kim KH, Bibb MJ, Choi IG, Stach JE	J Bacteriol	10.1128/JB.05041-11	2011	Antineoplastic Agents/metabolism, Bridged Bicyclo Compounds, Heterocyclic/metabolism, DNA, Bacterial/chemistry/genetics, Genome, Bacterial, Micromonosporaceae/genetics/isolation & purification/metabolism, Molecular Sequence Data, Netropsin/analogs & derivatives/metabolism, Sequence Analysis, DNA, Water Microbiology	Metabolism
Phylogeny	21989685	Verrucosispora maris sp. nov., a novel deep-sea actinomycete isolated from a marine sediment which produces abyssomicins.	Goodfellow M, Stach JE, Brown R, Bonda AN, Jones AL, Mexson J, Fiedler HP, Zucchi TD, Bull AT	Antonie Van Leeuwenhoek	10.1007/s10482-011-9651-5	2011	Amino Acids/analysis, Anti-Bacterial Agents/metabolism, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Geologic Sediments/microbiology, Micromonosporaceae/classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Genetics
Phylogeny	23111784	Verrucosispora fiedleri sp. nov., an actinomycete isolated from a fjord sediment which synthesizes proximicins.	Goodfellow M, Brown R, Ahmed L, Pathom-Aree W, Bull AT, Jones AL, Stach JE, Zucchi TD, Zhang L, Wang J	Antonie Van Leeuwenhoek	10.1007/s10482-012-9831-y	2012	Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Estuaries, Geologic Sediments/microbiology, Micromonosporaceae/classification/genetics/*isolation & purification, Molecular Sequence Data, Norway, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Genetics
Phylogeny	23710052	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013	Animals, Bacterial Typing Techniques, Base Composition, Carbohydrates/chemistry, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Micromonosporaceae/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand	Genetics
Phylogeny	30605079	Micromonospora craniellae sp. nov., isolated from a marine sponge, and reclassification of Jishengella endophytica as Micromonospora endophytica comb. nov.	Li L, Zhu HR, Xu QH, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003209	2019	Animals, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Genes, Bacterial, Micromonospora/classification/isolation & purification, Micromonosporaceae/classification, Nucleic Acid Hybridization, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA	Transcriptome
Metabolism	34073764	Abyssomicins-A 20-Year Retrospective View.	Fiedler HP	Mar Drugs	10.3390/md19060299	2021	Anti-Bacterial Agents/chemistry/metabolism/pharmacology, Bridged Bicyclo Compounds, Heterocyclic/chemistry/metabolism/pharmacology, Fermentation, Humans, Micromonosporaceae/genetics/metabolism/ultrastructure	Pathogenicity

Reference

@id	authors	catalogue	doi/url	title
16364	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45365)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-45365
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
77462	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID400183.1	StrainInfo: A central database for resolving microbial strain identifiers

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

multimedia

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

compound production

observation

metabolite production

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

GC content

Genome-based predictions

predictions

External links

straininfo link

literature

Reference