Strain identifier
BacDive ID: 8000
Type strain: 
Species: Micromonospora saelicesensis
Strain history: <- M. E. Trujillo; Lupac 07
NCBI tax ID(s): 285676 (species)
version 9.1 (current version)
General
@ref: 12156
BacDive-ID: 8000
DSM-Number: 44869
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Micromonospora saelicesensis DSM 44869 is a spore-forming bacterium that was isolated from root nodules of Lupinus agustifolius.
NCBI tax id
- NCBI tax id: 285676
- Matching level: species
strain history
- @ref: 12156
- history: <- M. E. Trujillo; Lupac 07
doi: 10.13145/bacdive8000.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora saelicesensis
- full scientific name: Micromonospora saelicesensis Trujillo et al. 2007
@ref: 12156
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora saelicesensis
full scientific name: Micromonospora saelicesensis Trujillo et al. 2007
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 92.337
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12156 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
| 12156 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
culture temp
- @ref: 12156
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 93.704
Isolation, sampling and environmental information
isolation
- @ref: 12156
- sample type: root nodules of Lupinus agustifolius
- host species: Lupinus angustifolius
- geographic location: Salamanca
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root nodule |
taxonmaps
- @ref: 69479
- File name: preview.99_3471.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_1111;98_1509;99_3471&stattab=map
- Last taxonomy: Micromonospora
- 16S sequence: AJ783991
- Sequence Identity:
- Total samples: 1419
- soil counts: 1017
- aquatic counts: 161
- animal counts: 219
- plant counts: 22
Safety information
risk assessment
- @ref: 12156
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 12156
- description: Micromonospora noduli partial 16S rRNA gene, strain Lupac 07
- accession: AJ783991
- length: 1510
- database: nuccore
- NCBI tax ID: 709876
Genome sequences
- @ref: 66792
- description: Micromonospora noduli strain Lupac 07
- accession: 709876.7
- assembly level: wgs
- database: patric
- NCBI tax ID: 709876
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.337 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.44 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 93.704 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.208 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.5 | no |
External links
@ref: 12156
culture collection no.: DSM 44869, Lupac 07
straininfo link
- @ref: 77430
- straininfo: 297444
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12156 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44869) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44869 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 77430 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297444.1 | StrainInfo: A central database for resolving microbial strain identifiers |