Strain identifier

BacDive ID: 8

Type strain: Yes

Species: Acetobacter orleanensis

Strain history: NCIB 8622 <-- W. Verhoeven L1027 <-- J. Frateur.

NCBI tax ID(s): 1231342 (strain), 104099 (species)

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General

@ref: 1704

BacDive-ID: 8

DSM-Number: 4492

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Acetobacter orleanensis DSM 4492 is an aerobe, mesophilic bacterium that was isolated from beer.

NCBI tax id

NCBI tax idMatching level
1231342strain
104099species

strain history

@refhistory
1704<- NCIMB <- W. Verhoeven <- J. Frateur
67770NCIB 8622 <-- W. Verhoeven L1027 <-- J. Frateur.

doi: 10.13145/bacdive8.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter orleanensis
  • full scientific name: Acetobacter orleanensis (Henneberg 1906) Lisdiyanti et al. 2001

  • synonyms

    @refsynonym
    20215Acetobacter aceti subsp. orleanensis
    20215Bacterium orleanense

@ref: 1704

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter orleanensis

full scientific name: Acetobacter orleanensis (Henneberg 1906) Lisdiyanti et al. 2001

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no95.17
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1704YPM MEDIUM (DSMZ Medium 360)yeshttps://mediadive.dsmz.de/medium/360Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
1704GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)yeshttps://mediadive.dsmz.de/medium/105Name: GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105) Composition: Glucose 100.0 g/l CaCO3 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1704positivegrowth28mesophilic
46760positivegrowth30mesophilic
46760positivegrowth25-30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46760
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.99

compound production

  • @ref: 1704
  • compound: restriction endonuclease AorI (BstNI)

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
1704beerBelgiumBELEurope
46760BeerBelgiumBELEurope1927
67770Belgian bottled beer

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Beverage
#Engineered#Food production#Fermented
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1214.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_1214&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: AB680506
  • Sequence Identity:
  • Total samples: 1514
  • soil counts: 185
  • aquatic counts: 172
  • animal counts: 932
  • plant counts: 225

Safety information

risk assessment

  • @ref: 1704
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter orleanensis strain DSM 4492 16S ribosomal RNA gene, partial sequenceJF7939631354ena104099
20218Acetobacter orleanensis gene for 16S rRNA, partial sequenceAB0323501443ena104099
20218Acetobacter orleanensis gene for 16S rRNA, partial sequence, strain: JCM 7639AB6650761412ena104099
20218Acetobacter orleanensis 16S rRNA gene, strain LMG 1583AJ4198451442ena104099
20218Acetobacter orleanensis strain LMG 1583 16S ribosomal RNA gene, partial sequenceJF7939621353ena104099
20218Acetobacter orleanensis gene for 16S rRNA, partial sequence, strain: NBRC 13752AB6805061415ena104099

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter aceti strain CCM 3610435.10plasmidpatric435
66792Acetobacter orleanensis JCM 76391231342.3wgspatric1231342
66792Acetobacter orleanensis strain CCM 3610104099.5wgspatric104099
66792Acetobacter orleanensis strain LMG 1583104099.3wgspatric104099
66792Acetobacter orleanensis strain NBRC 13752104099.6wgspatric104099
66792Acetobacter pasteurianus strain CCM 3610438.25plasmidpatric438
66792Acetobacter orleanensis CCM 36102854545835draftimg104099
66792Acetobacter orleanensis LMG 15832728368908draftimg104099
67770Acetobacter orleanensis JCM 7639 JCM 7639TGCA_000964205scaffoldncbi1231342
67770Acetobacter orleanensis NBRC 13752GCA_006539325contigncbi104099
67770Acetobacter orleanensis LMG 1583GCA_001581005contigncbi104099
67770Acetobacter orleanensis CCM 3610GCA_002358055scaffoldncbi104099

GC content

@refGC-contentmethod
6777056.5high performance liquid chromatography (HPLC)
6777056.8thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno86.027no
gram-positiveno97.372no
anaerobicno99.008yes
aerobicyes90.261yes
halophileno87.41no
spore-formingno96.68no
thermophileno97.656no
glucose-utilyes80.677no
flagellatedno97.313no
glucose-fermentno88.836no

External links

@ref: 1704

culture collection no.: DSM 4492, ATCC 12876, CCUG 18126, IMET 10752, LMD 31.3, LMG 1282, LMG 1583, NCIMB 8622, PDDCC 8809, KCTC 12329, JCM 7639, BCRC 11568, CCM 3610, ICMP 8809, IFO 13752, NBRC 13752, NCCB 31003, VTT E-042463

straininfo link

  • @ref: 69692
  • straininfo: 92677

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1704Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4492)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4492
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
46760Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 18126)https://www.ccug.se/strain?id=18126
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69692Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92677.1StrainInfo: A central database for resolving microbial strain identifiers