Strain identifier

BacDive ID: 7992

Type strain: Yes

Species: Micromonospora fulviviridis

Strain Designation: 71-m11

Strain history: CIP <- 2005, DSMZ <- JCM <- KCC <- X. Yan: strain 71-m11

NCBI tax ID(s): 47860 (species)

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General

@ref: 11381

BacDive-ID: 7992

DSM-Number: 43906

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Micromonospora fulviviridis 71-m11 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 47860
  • Matching level: species

strain history

@refhistory
11381<- JCM (Micromonospora fulvoviridis) <- KCC <- X. Yan, 71-m11
67770KCC A-0259 <-- X. Yan 71-m11.
119487CIP <- 2005, DSMZ <- JCM <- KCC <- X. Yan: strain 71-m11

doi: 10.13145/bacdive7992.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora fulviviridis
  • full scientific name: Micromonospora fulviviridis Kroppenstedt et al. 2005

@ref: 11381

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora fulviviridis

full scientific name: Micromonospora fulviviridis Kroppenstedt et al. 2005

strain designation: 71-m11

type strain: yes

Morphology

cell morphology

  • @ref: 119487
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony colorincubation periodmedium used
19976Salmon orange (2012)10-14 daysISP 2
19976Salmon pink (3022)10-14 daysISP 3
19976Salmon pink (3022)10-14 daysISP 4
19976Pastel yellow (1034)10-14 daysISP 5
19976Pastel yellow (1034)10-14 daysISP 6
19976Colourless10-14 daysISP 7
119487

multicellular morphology

@refforms multicellular complexmedium name
19976noISP 2
19976noISP 3
19976noISP 4
19976noISP 5
19976noISP 6
19976noISP 7

multimedia

@refmultimedia contentintellectual property rightscaption
11381https://www.dsmz.de/microorganisms/photos/DSM_43906-1.jpg© Leibniz-Institut DSMZ
11381https://www.dsmz.de/microorganisms/photos/DSM_43906.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11381GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
11381N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf
19976ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19976ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19976ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19976ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19976ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19976ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
119487CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
11381positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119487
  • oxygen tolerance: obligate aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1997617234glucose+
1997622599arabinose+
1997617992sucrose+
1997618222xylose-
1997617268myo-inositol-
1997629864mannitol+
1997628757fructose+
1997626546rhamnose-
1997616634raffinose+
1997662968cellulose+
11948717632nitrate+reduction
11948716301nitrite-reduction

metabolite production

  • @ref: 119487
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
119487oxidase-
119487alcohol dehydrogenase-1.1.1.1
119487catalase+1.11.1.6
119487lysine decarboxylase-4.1.1.18
119487ornithine decarboxylase-4.1.1.17
119487urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
19976+++++++-+++++-++---
119487+++++++++++---++----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
11381soil
67770SoilChinaCHNAsia
119487Environment, Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
113811Risk group (German classification)
199761German classification
1194871Risk group (French classification)

Sequence information

16S sequences

  • @ref: 11381
  • description: Micromonospora fulviviridis 16S rRNA gene, type strain DSM 43906
  • accession: X92620
  • length: 1465
  • database: ena
  • NCBI tax ID: 47860

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Micromonospora fulviviridis JCM 3259GCA_014648395scaffoldncbi47860
66792Micromonospora fulviviridis strain JCM 325947860.3wgspatric47860

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.07no
gram-positiveyes92.585no
anaerobicno99.375no
aerobicyes95.934no
halophileno95.092no
spore-formingyes92.953no
thermophileno99.272no
glucose-utilyes89.013no
motileno93.189no
glucose-fermentno91.481no

External links

@ref: 11381

culture collection no.: DSM 43906, ATCC 35574, CIP 108952, JCM 3259, KCC A-0259, NRRL B-16104, IFO 14026, IMSNU 21296, NBRC 14026

straininfo link

  • @ref: 77422
  • straininfo: 41166

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15997706Eight new species of the genus Micromonospora, Micromonospora citrea sp. nov., Micromonospora echinaurantiaca sp. nov., Micromonospora echinofusca sp. nov. Micromonospora fulviviridis sp. nov., Micromonospora inyonensis sp. nov., Micromonospora peucetia sp. nov., Micromonospora sagamiensis sp. nov., and Micromonospora viridifaciens sp. nov.Kroppenstedt RM, Mayilraj S, Wink JM, Kallow W, Schumann P, Secondini C, Stackebrandt ESyst Appl Microbiol10.1016/j.syapm.2004.12.0112005Carbohydrates/analysis, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Isomerism, Micromonospora/*classification/cytology/genetics/physiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Ribotyping, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Vitamin K 2/analysis
Phylogeny25687348Micromonospora costi sp. nov., isolated from a leaf of Costus speciosus.Thawai CInt J Syst Evol Microbiol10.1099/ijs.0.0001202015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Costus/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Micromonospora/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Vitamin K 2/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
11381Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43906)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43906
19976Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM43906.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
77422Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41166.1StrainInfo: A central database for resolving microbial strain identifiers
119487Curators of the CIPCollection of Institut Pasteur (CIP 108952)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108952