Strain identifier
BacDive ID: 7975
Type strain: 
Species: Micromonospora purpureochromogenes
Strain history: VKM Ac-1326 <-- INA 166.
NCBI tax ID(s): 47872 (species)
version 9.3 (current version)
General
@ref: 11287
BacDive-ID: 7975
DSM-Number: 43814
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Micromonospora purpureochromogenes DSM 43814 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 47872
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11287 | <- NRRL <- ATCC <- G.F. Gauze, INA |
| 67770 | KCC A-0233 <-- BKM A-614 <-- LIA 0744 <-- INA 472. |
| 67770 | VKM Ac-1326 <-- INA 166. |
doi: 10.13145/bacdive7975.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora purpureochromogenes
- full scientific name: Micromonospora purpureochromogenes corrig. (Waksman and Curtis 1916) Luedemann 1971 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces purpeochromogenus 20215 Micromonospora brunnea
@ref: 11287
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora purpureochromogenes
full scientific name: Micromonospora purpureochromogenes (Waksman and Curtis 1916) Luedemann 1971 emend. Carro et al. 2018
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.2 | |
| 125438 | 90.5 | no |
multimedia
- @ref: 11287
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43814.jpg
- caption: Medium 554 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11287 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
| 11287 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 11287 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.7
spore formation
- @ref: 125438
- spore formation: yes
- confidence: 92.322
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 11287 | soil |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 11287
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Micromonospora purpureochromogenes ATCC 27334 16S-23S ribosomal RNA intergenic spacer | AY371891 | 355 | nuccore | 47872 |
| 11287 | M.brunnea 16S rRNA gene | X92605 | 1475 | nuccore | 47872 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Micromonospora purpureochromogenes strain DSM 43814 | 47872.6 | wgs | patric | 47872 |
| 66792 | Micromonospora brunnea DSM 43814 | 2857413125 | draft | img | 47872 |
| 67770 | Micromonospora purpureochromogenes DSM 43814 | GCA_013410185 | contig | ncbi | 47872 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.192 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.874 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.322 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.98 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 54.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 78.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.2 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.7 |
External links
@ref: 11287
culture collection no.: DSM 43814, ATCC 27334, CBS 130.76, IFO 14069, IMET 8304, INA 166, JCM 3233, NBRC 14069, NRRL B-16079, VKM Ac-614, JCM 10141, CECT 3290, NCIMB 12732, VKM Ac-1326, BCRC 12627, IMSNU 20080, INA 472
straininfo link
- @ref: 77409
- straininfo: 38749
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11287 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43814) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43814 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 77409 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38749.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |