Strain identifier
BacDive ID: 7878
Type strain: 
Species: Dactylosporangium luteum
Strain Designation: BK51
Strain history: KACC 20899 <-- B.-Y. Kim BK51.
NCBI tax ID(s): 649007 (species)
version 8.1 (current version)
General
@ref: 16291
BacDive-ID: 7878
DSM-Number: 45323
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped
description: Dactylosporangium luteum BK51 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil taken from a hay meadow.
NCBI tax id
- NCBI tax id: 649007
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16291 | <- B.-Y. Kim, Univ. Newcastle; BK51 |
| 67770 | KACC 20899 <-- B.-Y. Kim BK51. |
doi: 10.13145/bacdive7878.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Dactylosporangium
- species: Dactylosporangium luteum
- full scientific name: Dactylosporangium luteum Kim et al. 2010
@ref: 16291
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Dactylosporangium
species: Dactylosporangium luteum
full scientific name: Dactylosporangium luteum Kim et al. 2010
strain designation: BK51
type strain: yes
Morphology
cell morphology
- @ref: 29586
- gram stain: positive
- cell length: 2-2.5 µm
- cell width: 1-1.2 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29586
- production: yes
multimedia
- @ref: 16291
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45323.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16291 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 16291 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
| 16291 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
| 16291 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16291 | positive | growth | 28 | mesophilic |
| 29586 | positive | growth | 15-30 | |
| 29586 | positive | optimum | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29586 | positive | growth | 05-10 | alkaliphile |
| 29586 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29586
- oxygen tolerance: aerobe
spore formation
- @ref: 29586
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 29586 | NaCl | positive | growth | 0-1.5 % |
| 29586 | NaCl | positive | optimum | 0-1.5 % |
observation
| @ref | observation |
|---|---|
| 29586 | aggregates in chains |
| 67770 | quinones: MK-9(H6), MK-9(H8) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29586 | 17234 | glucose | + | carbon source |
| 29586 | 28087 | glycogen | + | carbon source |
| 29586 | 17992 | sucrose | + | carbon source |
| 29586 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 29586
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16291 | soil taken from a hay meadow | Northumberland, Cockle Park Experimental Farm | United Kingdom | GBR | Europe |
| 67770 | Soil from Palace Leas meadow hay plot 6 at Cockle Park Experimental Farm | Northumberland | United Kingdom | GBR | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Meadow |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_875.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_521;97_600;98_690;99_875&stattab=map
- Last taxonomy: Dactylosporangium
- 16S sequence: FJ973604
- Sequence Identity:
- Total samples: 1735
- soil counts: 1581
- aquatic counts: 58
- animal counts: 75
- plant counts: 21
Safety information
risk assessment
- @ref: 16291
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16291
- description: Dactylosporangium luteum strain BK51 16S ribosomal RNA gene, partial sequence
- accession: FJ973604
- length: 1444
- database: ena
- NCBI tax ID: 649007
GC content
| @ref | GC-content | method |
|---|---|---|
| 16291 | 74 | thermal denaturation, midpoint method (Tm) |
| 29586 | 74 |
External links
@ref: 16291
culture collection no.: DSM 45323, KACC 20899, NRRL B-24774, JCM 17685, NBRC 109092
straininfo link
- @ref: 77314
- straininfo: 403953
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20688750 | Dactylosporangium luridum sp. nov., Dactylosporangium luteum sp. nov. and Dactylosporangium salmoneum sp. nov., nom. rev., isolated from soil. | Kim BY, Stach JEM, Weon HY, Kwon SW, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.016451-0 | 2010 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Micromonosporaceae/*classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Genetics |
| Phylogeny | 25987396 | Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc. | Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0478-3 | 2015 | Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Japan, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16291 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45323) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45323 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29586 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25978 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 77314 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403953.1 | StrainInfo: A central database for resolving microbial strain identifiers |