Strain identifier

BacDive ID: 7876

Type strain: Yes

Species: Dactylosporangium darangshiense

Strain Designation: DLS-44

Strain history: <- SD Lee, Cheju Univ.

NCBI tax ID(s): 579108 (species)

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General

@ref: 16012

BacDive-ID: 7876

DSM-Number: 45260

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Dactylosporangium darangshiense DLS-44 is an aerobe, spore-forming, mesophilic bacterium that was isolated from rock soil.

NCBI tax id

  • NCBI tax id: 579108
  • Matching level: species

strain history

@refhistory
16012<- S. D. Lee, Cheju National Univ., Rep. of Korea; DLS-44
67770S. D. Lee DLS-44.
67771<- SD Lee, Cheju Univ.

doi: 10.13145/bacdive7876.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Dactylosporangium
  • species: Dactylosporangium darangshiense
  • full scientific name: Dactylosporangium darangshiense Seo and Lee 2010

@ref: 16012

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Dactylosporangium

species: Dactylosporangium darangshiense

full scientific name: Dactylosporangium darangshiense Seo and Lee 2010

strain designation: DLS-44

type strain: yes

Morphology

cell morphology

@refgram stain
29423positive
67771positive

pigmentation

  • @ref: 29423
  • production: no

multimedia

  • @ref: 16012
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45260.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16012GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16012ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
16012GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16012positivegrowth28mesophilic
29423positivegrowth30-37mesophilic
29423positiveoptimum37mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
29423positivegrowth6.1-8.1
29423positiveoptimum7.1

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29423aerobe
67771aerobe

spore formation

  • @ref: 29423
  • spore formation: yes

halophily

  • @ref: 29423
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <1 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2942322599arabinose+carbon source
2942317057cellobiose+carbon source
2942328757fructose+carbon source
2942317234glucose+carbon source
2942317754glycerol+carbon source
2942317716lactose+carbon source
2942317306maltose+carbon source
2942329864mannitol+carbon source
2942337684mannose+carbon source
2942328053melibiose+carbon source
2942316634raffinose+carbon source
2942326546rhamnose+carbon source
2942317814salicin+carbon source
2942317992sucrose+carbon source
2942327082trehalose+carbon source
2942318222xylose+carbon source
294234853esculin+hydrolysis

enzymes

@refvalueactivityec
29423catalase+1.11.1.6
29423cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16012rock soilJeju, peak of the mountain Darangshi OreumRepublic of KoreaKORAsia
67770Rock soilJejuRepublic of KoreaKORAsia
67771From rock surface from the peak of Darangshi Oreum (Small Mountain)JejuRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 16012
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16012
  • description: Dactylosporangium darangshiense partial 16S rRNA gene, strain DLS-44
  • accession: FM882231
  • length: 1422
  • database: ena
  • NCBI tax ID: 579108

GC content

@refGC-contentmethod
1601269.8high performance liquid chromatography (HPLC)
2942369.8

External links

@ref: 16012

culture collection no.: DSM 45260, KCTC 19560, JCM 17441, NBRC 109065

straininfo link

  • @ref: 77312
  • straininfo: 404870

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19666791Dactylosporangium darangshiense sp. nov., isolated from rock soil.Seo SH, Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.012856-02009Algorithms, Altitude, Bacterial Typing Techniques, Culture Media, DNA, Bacterial/genetics/isolation & purification, Fatty Acids/analysis, Micromonosporaceae/classification/growth & development/*isolation & purification, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyCultivation
Phylogeny27091125Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.).Fan J, Liu C, Ma Z, Zhou S, Li W, Li J, Chu L, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-016-0697-22016Cell Wall/chemistry, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Lycopersicon esculentum/*microbiology, Micromonosporaceae/*classification/genetics/*isolation & purification/metabolism, Nucleic Acid Hybridization, Peptidoglycan/metabolism, Phenotype, Phospholipids/metabolism, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil MicrobiologyMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16012Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45260)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45260
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29423Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2582928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
77312Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404870.1StrainInfo: A central database for resolving microbial strain identifiers