Strain identifier
BacDive ID: 7869
Type strain: 
Species: Dactylosporangium aurantiacum
Strain Designation: D-748
Strain history: KCC A-0083 <-- J. E. Thiemann D-748.
NCBI tax ID(s): 35754 (species)
version 8.1 (current version)
General
@ref: 10825
BacDive-ID: 7869
DSM-Number: 43157
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Dactylosporangium aurantiacum D-748 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 35754
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10825 | <- KCC <- J.E. Thiemann, D-748 |
| 67770 | KCC A-0083 <-- J. E. Thiemann D-748. |
doi: 10.13145/bacdive7869.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Dactylosporangium
- species: Dactylosporangium aurantiacum
- full scientific name: Dactylosporangium aurantiacum Thiemann et al. 1967 (Approved Lists 1980)
@ref: 10825
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Dactylosporangium
species: Dactylosporangium aurantiacum
full scientific name: Dactylosporangium aurantiacum Thiemann et al. 1967 emend. Nouioui et al. 2018
strain designation: D-748
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10825 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10825 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 10825 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://mediadive.dsmz.de/medium/83 | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10825 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H8), MK-9(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 10825 | soil |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_875.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_521;97_600;98_690;99_875&stattab=map
- Last taxonomy: Dactylosporangium
- 16S sequence: U58528
- Sequence Identity:
- Total samples: 1735
- soil counts: 1581
- aquatic counts: 58
- animal counts: 75
- plant counts: 21
Safety information
risk assessment
- @ref: 10825
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Dactylosporangium aurantiacum 16S ribosomal RNA gene sequence | U58528 | 1410 | ena | 35754 |
| 20218 | D.aurantiacum gene for 16S rRNA (DSM 43157) | X72779 | 1358 | ena | 35754 |
| 20218 | D.aurantiacum 16S rRNA gene | X93191 | 1476 | ena | 35754 |
| 20218 | Dactylosporangium aurantiacum gene for 16S ribosomal RNA, partial sequence | D85480 | 1472 | ena | 35754 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Dactylosporangium aurantiacum NRRL B-8018 | GCA_000716715 | contig | ncbi | 35754 |
| 67770 | Dactylosporangium aurantiacum NRRL B-8111 | GCA_000716055 | scaffold | ncbi | 35754 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 73 | thermal denaturation, midpoint method (Tm) |
| 67770 | 73.2 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 57.151 | no |
| flagellated | no | 93.248 | no |
| gram-positive | yes | 87.665 | no |
| anaerobic | no | 98.957 | no |
| halophile | no | 95.851 | no |
| spore-forming | yes | 93.562 | no |
| thermophile | no | 98.981 | yes |
| glucose-util | yes | 89.744 | no |
| aerobic | yes | 90.933 | no |
| glucose-ferment | no | 90.455 | no |
External links
@ref: 10825
culture collection no.: DSM 43157, ATCC 23491, IFO 12592, IMET 9028, JCM 3083, KCC A-0083, NBRC 12592, RIA 922, BCRC 13312, CBS 621.67, CECT 3288, CGMCC 4.1066, IFM 1208, IMSNU 22001, IMSNU 22064, KCTC 9073, MTCC 500, NCIMB 12887, NRRL B-8018, NRRL B-8111, VKM Ac-654
straininfo link
- @ref: 77305
- straininfo: 38041
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19667384 | Dactylosporangium maewongense sp. nov., isolated from soil. | Chiaraphongphon S, Suriyachadkun C, Tamura T, Thawai C | Int J Syst Evol Microbiol | 10.1099/ijs.0.016378-0 | 2009 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Thailand | Genetics |
| Phylogeny | 25987396 | Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc. | Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0478-3 | 2015 | Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Japan, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Vitamin K 2/analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10825 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43157) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43157 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 77305 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38041.1 | StrainInfo: A central database for resolving microbial strain identifiers |