Strain identifier
BacDive ID: 7840
Type strain: 
Species: Actinoplanes friuliensis
Strain history: DSM 45797 <-- J. Wink; Sanofi Aventis, Germany; HAG 010964 <-- G. Vobis.
NCBI tax ID(s): 1246995 (strain), 196914 (species)
version 8.1 (current version)
General
@ref: 18228
BacDive-ID: 7840
DSM-Number: 45797
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, antibiotic compound production
description: Actinoplanes friuliensis DSM 45797 is an aerobe, spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 196914 | species |
| 1246995 | strain |
strain history
| @ref | history |
|---|---|
| 18228 | <- J. Wink, Sanofi Aventis Germany; HAG 010964 <- G. Vobis |
| 67770 | DSM 45797 <-- J. Wink; Sanofi Aventis, Germany; HAG 010964 <-- G. Vobis. |
doi: 10.13145/bacdive7840.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes friuliensis
- full scientific name: Actinoplanes friuliensis Aretz et al. 2001
@ref: 18228
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes friuliensis
full scientific name: Actinoplanes friuliensis Aretz et al. 2001 emend. Wink et al. 2014 emend. Nouioui et al. 2018
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 62956
- incubation period: 7 days
multimedia
- @ref: 18228
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45797.jpg
- caption: Medium 553 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18228 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 18228 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 18228 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 18228 | BHI MEDIUM (DSMZ Medium 215) | yes | https://mediadive.dsmz.de/medium/215 | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18228 | positive | growth | 28 | mesophilic |
| 62956 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62956
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
compound production
| @ref | compound |
|---|---|
| 18228 | friulimycin |
| 67770 | Friulimicins |
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H4), MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 18228 | soil | Friaul | Italy | ITA | Europe | |
| 62956 | Soil sample | Friaul | Italy | ITA | Europe | 1988 |
| 67770 | Soil | Friuli Province | Italy | ITA | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 18228
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18228
- description: Actinoplanes friuliensis partial 16S rRNA gene, type strain HAG 010964T
- accession: FR733685
- length: 1506
- database: ena
- NCBI tax ID: 1246995
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinoplanes friuliensis DSM 7358 | GCA_000494755 | complete | ncbi | 1246995 |
| 66792 | Actinoplanes friuliensis DSM 7358 | 1246995.3 | complete | patric | 1246995 |
| 66792 | Actinoplanes friuliensis DSM 7358 | 2554235379 | complete | img | 1246995 |
GC content
- @ref: 67770
- GC-content: 70.4
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 64.769 | no |
| flagellated | no | 88.263 | no |
| gram-positive | yes | 90.475 | no |
| anaerobic | no | 99.181 | yes |
| aerobic | yes | 95.038 | yes |
| halophile | no | 95.895 | no |
| spore-forming | yes | 92.18 | no |
| thermophile | no | 98.799 | yes |
| glucose-util | yes | 88.393 | no |
| glucose-ferment | no | 90.001 | no |
External links
@ref: 18228
culture collection no.: DSM 45797, CCUG 63250, JCM 31203, DSM 7358, HAG 010964
straininfo link
- @ref: 77277
- straininfo: 403024
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 11079803 | Friulimicins: novel lipopeptide antibiotics with peptidoglycan synthesis inhibiting activity from Actinoplanes friuliensis sp. nov. I. Taxonomic studies of the producing microorganism and fermentation. | Aretz W, Meiwes J, Seibert G, Vobis G, Wink J | J Antibiot (Tokyo) | 10.7164/antibiotics.53.807 | 2000 | Actinomycetales/*classification/*metabolism/physiology, Anti-Bacterial Agents/metabolism/*pharmacology, Drug Evaluation, Preclinical/methods, Fatty Acids/metabolism, Fermentation, Microbial Sensitivity Tests, Peptidoglycan/biosynthesis/drug effects, Protein Synthesis Inhibitors/metabolism/*pharmacology | Phylogeny |
| Phylogeny | 11079804 | Friulimicins: novel lipopeptide antibiotics with peptidoglycan synthesis inhibiting activity from Actinoplanes friuliensis sp. nov. II. Isolation and structural characterization. | Vertesy L, Ehlers E, Kogler H, Kurz M, Meiwes J, Seibert G, Vogel M, Hammann P | J Antibiot (Tokyo) | 10.7164/antibiotics.53.816 | 2000 | Actinomycetales/*metabolism, Anti-Bacterial Agents/*chemistry/isolation & purification, Antimicrobial Cationic Peptides, Magnetic Resonance Spectroscopy, Molecular Structure, *Peptides, Peptidoglycan/biosynthesis/drug effects, Protein Synthesis Inhibitors/*chemistry/isolation & purification | Enzymology |
| Phylogeny | 24158947 | Emended description of Actinoplanes friuliensis and description of Actinoplanes nipponensis sp. nov., antibiotic-producing species of the genus Actinoplanes. | Wink J, Schumann P, Spoer C, Eisenbarth K, Glaeser SP, Martin K, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijs.0.057836-0 | 2013 | Anti-Bacterial Agents/*biosynthesis, DNA, Bacterial/genetics, Fatty Acids/chemistry, Italy, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Genetics | 24637369 | Complete genome sequence of the actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin. | Ruckert C, Szczepanowski R, Albersmeier A, Goesmann A, Fischer N, Steinkamper A, Puhler A, Biener R, Schwartz D, Kalinowski J | J Biotechnol | 10.1016/j.jbiotec.2014.03.011 | 2014 | Anti-Bacterial Agents/*metabolism, Antimicrobial Cationic Peptides, Genome, Bacterial/*genetics, Lipopeptides/*metabolism, Micromonosporaceae/*genetics/metabolism, Molecular Sequence Data, Peptides/*metabolism | Metabolism |
| Phylogeny | 26552374 | Actinoplanes lichenis sp. nov., isolated from lichen. | Phongsopitanun W, Matsumoto A, Inahashi Y, Kudo T, Mori M, Shiomi K, Takahashi Y, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000746 | 2015 | Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lichens/*microbiology, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Bark, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18228 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45797) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45797 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 62956 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 63250) | https://www.ccug.se/strain?id=63250 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77277 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403024.1 | StrainInfo: A central database for resolving microbial strain identifiers |