Strain identifier
BacDive ID: 7821
Type strain:
Species: Actinoplanes sp.
Strain Designation: Amp.-8
Strain history: KCC A-0236 <-- H. Nonomura Amp-8.
NCBI tax ID(s): 1463979 (species)
General
@ref: 11374
BacDive-ID: 7821
DSM-Number: 43899
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Actinoplanes sp. Amp.-8 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1463979
- Matching level: species
strain history
@ref | history |
---|---|
11374 | <- JCM <- KCC <- H. Nonomura, Amp.-8 |
67770 | KCC A-0236 <-- H. Nonomura Amp-8. |
doi: 10.13145/bacdive7821.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes sp.
- full scientific name: Actinoplanes Couch 1950 (Approved Lists 1980)
synonyms
@ref synonym 20215 Amorphosporangium 20215 Ampullaria 20215 Ampullariella
@ref: 11374
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes sp.
full scientific name: Actinoplanes sp.
strain designation: Amp.-8
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link |
---|---|---|---|
11374 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf |
11374 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
11374 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
11374 | soil | |||
67770 | Soil | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 20218
- description: Ampullariella violaceochromogenes gene for 16S rRNA, partial sequence, strain: IFO 14066
- accession: AB047508
- length: 1473
- database: ena
- NCBI tax ID: 1463979
Genome sequences
- @ref: 67770
- description: Ampullariella violaceochromogenes NRRL B-16710
- accession: GCA_000718415
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1463979
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 62.009 | no |
flagellated | no | 89.718 | no |
gram-positive | yes | 86.308 | no |
anaerobic | no | 98.812 | no |
halophile | no | 93.926 | no |
spore-forming | yes | 92.898 | no |
thermophile | no | 98.912 | no |
glucose-util | yes | 89.805 | no |
aerobic | yes | 92.456 | no |
glucose-ferment | no | 87.443 | no |
External links
@ref: 11374
culture collection no.: DSM 43899, IFO 14066, IMET 9266, JCM 3236, KCC A-0236, NBRC 14066, BCRC 12443, KCTC 9600, NCIMB 12738, NRRL B-16710
straininfo link
- @ref: 77262
- straininfo: 50449
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
11374 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43899) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43899 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
77262 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50449.1 | StrainInfo: A central database for resolving microbial strain identifiers |