Strain identifier

BacDive ID: 7821

Type strain: No

Species: Actinoplanes sp.

Strain Designation: Amp.-8

Strain history: KCC A-0236 <-- H. Nonomura Amp-8.

NCBI tax ID(s): 1463979 (species)

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General

@ref: 11374

BacDive-ID: 7821

DSM-Number: 43899

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Actinoplanes sp. Amp.-8 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1463979
  • Matching level: species

strain history

@refhistory
11374<- JCM <- KCC <- H. Nonomura, Amp.-8
67770KCC A-0236 <-- H. Nonomura Amp-8.

doi: 10.13145/bacdive7821.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Actinoplanes
  • species: Actinoplanes sp.
  • full scientific name: Actinoplanes Couch 1950 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Amorphosporangium
    20215Ampullaria
    20215Ampullariella

@ref: 11374

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Actinoplanes

species: Actinoplanes sp.

full scientific name: Actinoplanes sp.

strain designation: Amp.-8

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlink
11374GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
11374N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium554.pdf

culture temp

@refgrowthtypetemperaturerange
11374positivegrowth28mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
11374soil
67770SoilJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 20218
  • description: Ampullariella violaceochromogenes gene for 16S rRNA, partial sequence, strain: IFO 14066
  • accession: AB047508
  • length: 1473
  • database: ena
  • NCBI tax ID: 1463979

Genome sequences

  • @ref: 67770
  • description: Ampullariella violaceochromogenes NRRL B-16710
  • accession: GCA_000718415
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1463979

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes62.009no
flagellatedno89.718no
gram-positiveyes86.308no
anaerobicno98.812no
halophileno93.926no
spore-formingyes92.898no
thermophileno98.912no
glucose-utilyes89.805no
aerobicyes92.456no
glucose-fermentno87.443no

External links

@ref: 11374

culture collection no.: DSM 43899, IFO 14066, IMET 9266, JCM 3236, KCC A-0236, NBRC 14066, BCRC 12443, KCTC 9600, NCIMB 12738, NRRL B-16710

straininfo link

  • @ref: 77262
  • straininfo: 50449

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11374Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43899)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43899
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
77262Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50449.1StrainInfo: A central database for resolving microbial strain identifiers