Strain identifier
BacDive ID: 7815
Type strain: 
Species: Actinoplanes utahensis
Strain Designation: UNCC 260
Strain history: KCC A-0122 <-- A. Domnas UNCC 260.
NCBI tax ID(s): 1869 (species)
version 8.1 (current version)
General
@ref: 10817
BacDive-ID: 7815
DSM-Number: 43147
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Actinoplanes utahensis UNCC 260 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1869
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10817 | <- KCC <- A. Domnas, UNCC, 260 |
| 67770 | KCC A-0122 <-- A. Domnas UNCC 260. |
doi: 10.13145/bacdive7815.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes utahensis
- full scientific name: Actinoplanes utahensis Couch 1963 (Approved Lists 1980)
@ref: 10817
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes utahensis
full scientific name: Actinoplanes utahensis Couch 1963
strain designation: UNCC 260
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 10817
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43147.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10817 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10817 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | yes | https://mediadive.dsmz.de/medium/83 | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10817 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 99.448 |
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-10(H4), MK-9(H4), MK-9(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 10817 | soil | ||||
| 67770 | Soil, Liberty Park | Salt Lake City, UT | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 10817
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinoplanes utahensis gene for 16S rRNA, partial sequence | AB037012 | 1471 | ena | 1869 |
| 10817 | Actinoplanes utahensis partial 16S rRNA gene, strain IMSNU 20044T | AJ277574 | 1508 | ena | 1869 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinoplanes utahensis NBRC 13244 | GCA_016862455 | contig | ncbi | 1869 |
| 66792 | Actinoplanes utahensis strain NBRC 13244 | 1869.6 | wgs | patric | 1869 |
GC content
- @ref: 67770
- GC-content: 72.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 68.575 | no |
| gram-positive | yes | 90.235 | no |
| anaerobic | no | 99.121 | no |
| halophile | no | 95.658 | no |
| spore-forming | yes | 93.206 | no |
| glucose-util | yes | 91.267 | no |
| flagellated | no | 87.556 | no |
| thermophile | no | 98.692 | yes |
| aerobic | yes | 93.662 | no |
| glucose-ferment | no | 90.162 | no |
External links
@ref: 10817
culture collection no.: DSM 43147, ATCC 14539, CBS 367.66, IFO 13244, JCM 3122, KCC A-0122, NBRC 13244, BCC 49177, BCRC 13336, CGMCC 4.1489, CGMCC 4.1543, IFM 1251, IMET 9252, IMSNU 20044, KCTC 9545, NCIMB 12886, NRRL B-16727, TBRC 169, VKM Ac-674
straininfo link
- @ref: 77257
- straininfo: 88620
literature
- Pubmed-ID: 22813592
- title: Teichulosonic acid, an anionic polymer of a new class from the cell wall of Actinoplanes utahensis VKM Ac-674(T).
- authors: Shashkov AS, Streshinskaya GM, Kozlova YI, Tul'skaya EM, Senchenkova SN, Arbatskii NP, Bueva OV, Evtushenko LI
- journal: Biochemistry (Mosc)
- DOI: 10.1134/S0006297912050112
- year: 2012
- mesh: Actinomycetales/*chemistry, Anions/chemistry, Cell Wall/chemistry, Magnetic Resonance Spectroscopy, Polymers/*chemistry, Polysaccharides/chemistry, Teichoic Acids/*chemistry
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10817 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43147) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43147 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77257 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID88620.1 | StrainInfo: A central database for resolving microbial strain identifiers |