Strain identifier

BacDive ID: 7810

Type strain: Yes

Species: Actinoplanes philippinensis

Strain Designation: UNCC P-15

Culture col. no.: DSM 43019, ATCC 12427, BCC 60401, CBS 107.58, IAM 14278, IFO 13878, IMET 9218, JCM 3001, KCC A-0001, NBRC 13878, NRRL 2506, RIA 468, TBRC 2206

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General

@ref: 10691

BacDive-ID: 7810

DSM-Number: 43019

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Actinoplanes philippinensis UNCC P-15 is a mesophilic bacterium that was isolated from soil from a rice paddy.

strain history: <- KCC <- T. Frumai, MCRL <- T. Yamaguchi, IAM <- J.N. Couch, UNCC, P-15

doi: 10.13145/bacdive7810.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Actinoplanes
  • species: Actinoplanes philippinensis
  • full scientific name: Actinoplanes philippinensis Couch 1950 (Approved Lists 1980)

@ref: 10691

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Actinoplanes

species: Actinoplanes philippinensis

full scientific name: Actinoplanes philippinensis Couch 1950 emend. Nouioui et al. 2018

strain designation: UNCC P-15

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
10691BHI-GLUCOSE MEDIUM (DSMZ Medium 82)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium82.pdf
10691GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

  • @ref: 10691
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 10691
  • sample type: soil from a rice paddy
  • country: Philippines
  • origin.country: PHL
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 10691
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinoplanes philippinensis 16S ribosomal RNA gene sequenceU585251411ena35752
20218A.philippinensis gene for 16S rRNAX728641316ena35752
20218A.philippinensis 16S rRNA geneX931871442ena35752
20218Actinoplanes philippinensis gene for 16S ribosomal RNA, partial sequenceD854741471ena35752

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinoplanes philippinensis DSM 43019GCA_900113015contigncbi35752
66792Actinoplanes philippinensis strain DSM 4301935752.4wgspatric35752
66792Actinoplanes philippinensis DSM 430192675903218permanentimg35752

External links

@ref: 10691

culture collection no.: DSM 43019, ATCC 12427, BCC 60401, CBS 107.58, IAM 14278, IFO 13878, IMET 9218, JCM 3001, KCC A-0001, NBRC 13878, NRRL 2506, RIA 468, TBRC 2206

straininfo link

@refpassport
20218http://www.straininfo.net/strains/167551
20218http://www.straininfo.net/strains/96282
20218http://www.straininfo.net/strains/230669
20218http://www.straininfo.net/strains/167553
20218http://www.straininfo.net/strains/167554
20218http://www.straininfo.net/strains/167555
20218http://www.straininfo.net/strains/167556
20218http://www.straininfo.net/strains/167557
20218http://www.straininfo.net/strains/333244
20218http://www.straininfo.net/strains/167558
20218http://www.straininfo.net/strains/167559

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10691Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43019)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43019
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)