Strain identifier
BacDive ID: 7805
Type strain: 
Species: Actinoplanes globisporus
Strain Designation: SS/37
Strain history: KCC A-0186 <-- ATCC 23056 <-- J. E. Thiemann SS/37.
NCBI tax ID(s): 1120949 (strain), 113565 (species)
version 9.3 (current version)
General
@ref: 11339
BacDive-ID: 7805
DSM-Number: 43857
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Actinoplanes globisporus SS/37 is a spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 113565 | species |
| 1120949 | strain |
strain history
| @ref | history |
|---|---|
| 11339 | <- JCM <- KCC <- ATCC <- J.E. Thiemann, SS/37 |
| 67770 | KCC A-0186 <-- ATCC 23056 <-- J. E. Thiemann SS/37. |
doi: 10.13145/bacdive7805.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Actinoplanes
- species: Actinoplanes globisporus
- full scientific name: Actinoplanes globisporus (Thiemann 1967) Stackebrandt and Kroppenstedt 1988
synonyms
@ref synonym 20215 Paractinoplanes globisporus 20215 Amorphosporangium globisporum
@ref: 11339
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Actinoplanes
species: Actinoplanes globisporus
full scientific name: Actinoplanes globisporus (Thiemann 1967) Stackebrandt and Kroppenstedt 1988 emend. Nouioui et al. 2018
strain designation: SS/37
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: positive
- confidence: 99.8
multimedia
- @ref: 11339
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43857.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11339 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 11339 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 11339 | BENNETT'S AGAR (DSMZ Medium 548) | yes | https://mediadive.dsmz.de/medium/548 | Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 11339 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.3
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11339 | soil | Como, Appiano Gentile | Italy | ITA | Europe |
| 67770 | Soil | Appiano Gentile, Como | Italy | ITA | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 11339
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Actinoplanes globisporus gene for 16S rRNA, partial sequence | AB037003 | 1476 | nuccore | 113565 |
| 20218 | Actinoplanes globisporus partial 16S rRNA gene, strain IMSNU 20030T | AJ277570 | 1452 | nuccore | 113565 |
| 20218 | Actinoplanes globisporus gene for 16S ribosomal RNA, partial sequence | AB048219 | 1444 | nuccore | 113565 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Actinoplanes globisporus DSM 43857 | 1120949.3 | wgs | patric | 1120949 |
| 66792 | Actinoplanes globisporus DSM 43857 | 2515154017 | draft | img | 1120949 |
| 67770 | Actinoplanes globisporus DSM 43857 | GCA_000379645 | scaffold | ncbi | 1120949 |
GC content
- @ref: 67770
- GC-content: 70.9
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.087 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 91.271 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 88.086 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.835 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 62.433 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 84.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 87.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.3 |
External links
@ref: 11339
culture collection no.: DSM 43857, ATCC 23056, DSM 43894, IFO 13912, IMET 9263, JCM 3186, KCC A-0186, NBRC 13912, BCRC 13628, IFM 1259, IMSNU 20030, KCTC 9591, NCIMB 12638, TBRC 10999
straininfo link
- @ref: 77247
- straininfo: 88614
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22354131 | Actinoplanes rishiriensis sp. nov., a novel motile actinomycete isolated by rehydration and centrifugation method. | Yamamura H, Shimizu A, Nakagawa Y, Hamada M, Otoguro M, Tamura T, Hayakawa M | J Antibiot (Tokyo) | 10.1038/ja.2012.8 | 2012 | Actinobacteria/classification/genetics/isolation & purification, Actinomycetales/*classification/genetics/isolation & purification, Hydrogen-Ion Concentration, Japan, Nucleic Acid Hybridization/methods, Phylogeny, *RNA, Bacterial, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA, *Soil Microbiology, Species Specificity | Enzymology |
| Phylogeny | 26432564 | Actinoplanes rhizophilus sp. nov., an actinomycete isolated from the rhizosphere of Sansevieria trifasciata Prain. | He H, Xing J, Liu C, Li C, Ma Z, Li J, Xiang W, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000646 | 2015 | Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sansevieria/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Genetics |
| Metabolism | 29974366 | Actinoplanes deserti sp. nov., isolated from a desert soil sample. | Habib N, Khan IU, Chu X, Xiao M, Li S, Fang BZ, Zhi XY, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1121-x | 2018 | Base Composition, Cell Wall/*chemistry/metabolism, China, Desert Climate, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Galactose/metabolism, Glucose/metabolism, Glycolipids/metabolism, Mannose/metabolism, Micromonosporaceae/classification/*genetics/isolation & purification, Peptidoglycan/*chemistry/metabolism, Phospholipids/metabolism, *Phylogeny, RNA, Ribosomal, 16S/*genetics, Ribose/metabolism, Soil Microbiology, Spores, Bacterial/chemistry/growth & development, Vitamin K 2/metabolism, Xylose/metabolism | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11339 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43857) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43857 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 77247 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID88614.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |