Strain identifier
BacDive ID: 78
Type strain: 
Species: Roseomonas pecuniae
Strain Designation: N75
Variant: Isotype of BacDive ID 77
Strain history: <- CIP <- P. V. Morais, Univ. Coimbra, FCTUC, Portugal; N75
NCBI tax ID(s): 693023 (species)
version 8.1 (current version)
General
@ref: 18067
BacDive-ID: 78
DSM-Number: 25622
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Roseomonas pecuniae N75 is a mesophilic, Gram-negative bacterium that was isolated from surface of a copper European coin.
NCBI tax id
- NCBI tax id: 693023
- Matching level: species
strain history
- @ref: 18067
- history: <- CIP <- P. V. Morais, Univ. Coimbra, FCTUC, Portugal; N75
doi: 10.13145/bacdive78.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas pecuniae
- full scientific name: Roseomonas pecuniae Lopes et al. 2011
synonyms
- @ref: 20215
- synonym: Pararoseomonas pecuniae
@ref: 18067
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas pecuniae
full scientific name: Roseomonas pecuniae Lopes et al. 2011
strain designation: N75
variant: Isotype of BacDive ID 77
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
colony morphology
- @ref: 18067
- incubation period: 2-3 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18067 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 121646 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 18067
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 95 |
| 69480 | no | 99.995 |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 18067 | catalase | + | 1.11.1.6 |
| 18067 | cytochrome-c oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 18067
- sample type: surface of a copper European coin
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Other
- Cat3: #Currency
Safety information
risk assessment
- @ref: 18067
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Roseomonas pecuniae DSM 25622 | GCA_014199205 | scaffold | ncbi | 693023 |
| 66792 | Roseomonas pecuniae strain DSM 25622 | 693023.3 | wgs | patric | 693023 |
| 66792 | Roseomonas pecuniae DSM 25622 | 2828364626 | draft | img | 693023 |
GC content
- @ref: 18067
- GC-content: 72.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 95 | no |
| flagellated | no | 82.855 | no |
| gram-positive | no | 97.874 | no |
| anaerobic | no | 98.788 | no |
| aerobic | yes | 91.867 | no |
| halophile | no | 87.797 | no |
| spore-forming | no | 95.109 | no |
| glucose-util | yes | 80.225 | no |
| thermophile | no | 92.422 | no |
| motile | yes | 64.664 | no |
| glucose-ferment | no | 90.269 | no |
External links
@ref: 18067
culture collection no.: DSM 25622, CIP 110074, LMG 25481
literature
- topic: Phylogeny
- Pubmed-ID: 20400668
- title: Roseomonas pecuniae sp. nov., isolated from the surface of a copper-alloy coin.
- authors: Lopes A, Espirito Santo C, Grass G, Chung AP, Morais PV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.020966-0
- year: 2010
- mesh: Alloys, Base Composition, Cluster Analysis, Copper, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Methylobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Numismatics, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18067 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25622) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25622 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 121646 | Curators of the CIP | Collection of Institut Pasteur (CIP 110074) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110074 |