Strain identifier

BacDive ID: 7791

Type strain: Yes

Species: Sinomonas soli

Strain Designation: CW 59

Strain history: <- Y Zhou, Nanjing Agri. Univ., China

NCBI tax ID(s): 991009 (species)

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General

@ref: 18230

BacDive-ID: 7791

DSM-Number: 26463

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Sinomonas soli CW 59 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from polluted forest soil.

NCBI tax id

  • NCBI tax id: 991009
  • Matching level: species

strain history

@refhistory
18230<- KCTC; KCTC 19389
67770KCTC 19389 <-- Y. Zhou et al. CW 59.
67771<- Y Zhou, Nanjing Agri. Univ., China

doi: 10.13145/bacdive7791.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Sinomonas
  • species: Sinomonas soli
  • full scientific name: Sinomonas soli Zhou et al. 2012

@ref: 18230

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Sinomonas

species: Sinomonas soli

full scientific name: Sinomonas soli Zhou et al. 2012

strain designation: CW 59

type strain: yes

Morphology

cell morphology

@refgram staincell shape
30183positiverod-shaped
67771rod-shaped
67771positive

pigmentation

  • @ref: 30183
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 18230
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18230positivegrowth28mesophilic
30183positivegrowth15-42
30183positiveoptimum30-37mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30183positivegrowth05-09alkaliphile
30183positiveoptimum06-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30183aerobe
67771aerobe

halophily

  • @ref: 30183
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

observation

@refobservation
67770quinones: MK-9(H2)
67771quinones: MK-9(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3018328757fructose+carbon source
3018329864mannitol+carbon source
3018337684mannose+carbon source
30183506227N-acetylglucosamine+carbon source
3018317814salicin+carbon source
3018317992sucrose+carbon source
3018353426tween 80+carbon source
301834853esculin+hydrolysis

enzymes

@refvalueactivityec
30183catalase+1.11.1.6
30183urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18230polluted forest soilAnhui ProvinceChinaCHNAsia
67770Polluted forest soilAnhui ProvinceChinaCHNAsia
67771From polluted forest soilAnhui ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7227.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3294;97_4040;98_5304;99_7227&stattab=map
  • Last taxonomy: Sinomonas
  • 16S sequence: HQ605707
  • Sequence Identity:
  • Total samples: 3115
  • soil counts: 1972
  • aquatic counts: 434
  • animal counts: 554
  • plant counts: 155

Safety information

risk assessment

  • @ref: 18230
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18230
  • description: Sinomonas soli strain CW 59 16S ribosomal RNA gene, partial sequence
  • accession: HQ605707
  • length: 1347
  • database: ena
  • NCBI tax ID: 991009

GC content

@refGC-contentmethod
1823066.9
6777066.9high performance liquid chromatography (HPLC)

External links

@ref: 18230

culture collection no.: DSM 26463, CCTCC AB 207193, KCTC 19389, JCM 19961

straininfo link

  • @ref: 77234
  • straininfo: 401095

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21571934Description of Sinomonas soli sp. nov., reclassification of Arthrobacter echigonensis and Arthrobacter albidus (Ding et al. 2009) as Sinomonas echigonensis comb. nov. and Sinomonas albida comb. nov., respectively, and emended description of the genus Sinomonas.Zhou Y, Chen X, Zhang Y, Wang W, Xu JInt J Syst Evol Microbiol10.1099/ijs.0.030361-02011Amino Acids/chemistry, Arthrobacter/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polycyclic Aromatic Hydrocarbons, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Trees/microbiology, Vitamin K 2/analogs & derivatives/chemistryEnzymology
Phylogeny25563924Sinomonas humi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil.Lee LH, Azman AS, Zainal N, Yin WF, Mutalib NA, Chan KGInt J Syst Evol Microbiol10.1099/ijs.0.0000532015Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Glycolipids/chemistry, Malaysia, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny25589734Sinomonas susongensis sp. nov., isolated from the surface of weathered biotite.Bao YY, Huang Z, Mao DM, Sheng XF, He LYInt J Syst Evol Microbiol10.1099/ijs.0.0000642015*Aluminum Silicates, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Ferrous Compounds, Glycolipids/chemistry, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26205207Sinomonas halotolerans sp. nov., an actinobacterium isolated from a soil sample.Guo QQ, Ming H, Meng XL, Huang JR, Duan YY, Li SH, Li S, Zhang JX, Li WJ, Nie GXAntonie Van Leeuwenhoek10.1007/s10482-015-0543-y2015Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Micrococcaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, VietnamGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18230Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26463)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26463
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30183Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2653128776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77234Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401095.1StrainInfo: A central database for resolving microbial strain identifiers