Strain identifier
BacDive ID: 7789
Type strain:
Species: Yaniella soli
Strain history: <- Y-G Chen, Yunnan Inst., China
NCBI tax ID(s): 587739 (species)
version 8.1 (current version)
General
@ref: 16204
BacDive-ID: 7789
DSM-Number: 22211
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Yaniella soli DSM 22211 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 587739
- Matching level: species
strain history
@ref | history |
---|---|
16204 | <- S.-K. Tang and Y.-G. Chen, YIM; JSM 070026 <- Y.-G. Chen and Q.-H. Chen |
67770 | KCTC 13527 <-- Y.-G. Chen et al. JSM 070026. |
67771 | <- Y-G Chen, Yunnan Inst., China |
doi: 10.13145/bacdive7789.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Yaniella
- species: Yaniella soli
- full scientific name: Yaniella soli Chen et al. 2012
@ref: 16204
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Yaniella
species: Yaniella soli
full scientific name: Yaniella soli Chen et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 16204
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16204 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
murein
- @ref: 16204
- murein short key: A11.56
- type: A4alpha L-Lys-Gly-L-Glu
observation
@ref | observation |
---|---|
67770 | quinones: MK-8, MK-7, MK-9 |
67771 | quinones: MK-8 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
16204 | forest soil | Hunan Province | China | CHN | Asia |
67771 | From forest soil | Hunan Province | China | CHN | Asia |
67770 | Non-saline forest soil in Hunan Province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_41669.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2597;97_3180;98_3993;99_41669&stattab=map
- Last taxonomy: Yaniella
- 16S sequence: FJ527420
- Sequence Identity:
- Total samples: 290
- soil counts: 38
- aquatic counts: 40
- animal counts: 204
- plant counts: 8
Safety information
risk assessment
- @ref: 16204
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16204
- description: Yaniella soli strain JSM 070026 16S ribosomal RNA gene, partial sequence
- accession: FJ527420
- length: 1509
- database: ena
- NCBI tax ID: 587739
GC content
@ref | GC-content | method |
---|---|---|
16204 | 56.7 | |
67770 | 56.7 | high performance liquid chromatography (HPLC) |
External links
@ref: 16204
culture collection no.: DSM 22211, KCTC 13527, JSM 070026, JCM 19966
straininfo link
- @ref: 77232
- straininfo: 397821
literature
- topic: Phylogeny
- Pubmed-ID: 20461464
- title: Yaniella soli sp. nov., a new actinobacterium isolated from non-saline forest soil in China.
- authors: Chen YG, Chen J, Chen QH, Tang SK, Zhang YQ, He JW, Li WJ, Liu YQ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-010-9453-1
- year: 2010
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Micrococcaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride, *Soil Microbiology, Trees/*microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16204 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22211) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22211 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
77232 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397821.1 | StrainInfo: A central database for resolving microbial strain identifiers |