Strain identifier

BacDive ID: 7789

Type strain: Yes

Species: Yaniella soli

Strain history: <- Y-G Chen, Yunnan Inst., China

NCBI tax ID(s): 587739 (species)

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General

@ref: 16204

BacDive-ID: 7789

DSM-Number: 22211

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Yaniella soli DSM 22211 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from forest soil.

NCBI tax id

  • NCBI tax id: 587739
  • Matching level: species

strain history

@refhistory
16204<- S.-K. Tang and Y.-G. Chen, YIM; JSM 070026 <- Y.-G. Chen and Q.-H. Chen
67770KCTC 13527 <-- Y.-G. Chen et al. JSM 070026.
67771<- Y-G Chen, Yunnan Inst., China

doi: 10.13145/bacdive7789.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Yaniella
  • species: Yaniella soli
  • full scientific name: Yaniella soli Chen et al. 2012

@ref: 16204

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Yaniella

species: Yaniella soli

full scientific name: Yaniella soli Chen et al. 2012

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: positive

Culture and growth conditions

culture medium

  • @ref: 16204
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16204positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

murein

  • @ref: 16204
  • murein short key: A11.56
  • type: A4alpha L-Lys-Gly-L-Glu

observation

@refobservation
67770quinones: MK-8, MK-7, MK-9
67771quinones: MK-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16204forest soilHunan ProvinceChinaCHNAsia
67771From forest soilHunan ProvinceChinaCHNAsia
67770Non-saline forest soil in Hunan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_41669.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2597;97_3180;98_3993;99_41669&stattab=map
  • Last taxonomy: Yaniella
  • 16S sequence: FJ527420
  • Sequence Identity:
  • Total samples: 290
  • soil counts: 38
  • aquatic counts: 40
  • animal counts: 204
  • plant counts: 8

Safety information

risk assessment

  • @ref: 16204
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16204
  • description: Yaniella soli strain JSM 070026 16S ribosomal RNA gene, partial sequence
  • accession: FJ527420
  • length: 1509
  • database: ena
  • NCBI tax ID: 587739

GC content

@refGC-contentmethod
1620456.7
6777056.7high performance liquid chromatography (HPLC)

External links

@ref: 16204

culture collection no.: DSM 22211, KCTC 13527, JSM 070026, JCM 19966

straininfo link

  • @ref: 77232
  • straininfo: 397821

literature

  • topic: Phylogeny
  • Pubmed-ID: 20461464
  • title: Yaniella soli sp. nov., a new actinobacterium isolated from non-saline forest soil in China.
  • authors: Chen YG, Chen J, Chen QH, Tang SK, Zhang YQ, He JW, Li WJ, Liu YQ
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-010-9453-1
  • year: 2010
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Genes, rRNA, Micrococcaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride, *Soil Microbiology, Trees/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
16204Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22211)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22211
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77232Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397821.1StrainInfo: A central database for resolving microbial strain identifiers