Strain identifier

BacDive ID: 7786

Type strain: Yes

Species: Zhihengliuella salsuginis

Strain history: <- X-L Cui, Yunnan Inst., China

NCBI tax ID(s): 578222 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15491

BacDive-ID: 7786

DSM-Number: 21149

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Zhihengliuella salsuginis DSM 21149 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from subterranean brine sample, salt mine Xiangli.

NCBI tax id

  • NCBI tax id: 578222
  • Matching level: species

strain history

@refhistory
15491<- X.-L. Cui, YIM; JSM 071043 <- Y.-G. Chen and H.-D. Xiao
67771<- X-L Cui, Yunnan Inst., China

doi: 10.13145/bacdive7786.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Zhihengliuella
  • species: Zhihengliuella salsuginis
  • full scientific name: Zhihengliuella salsuginis Chen et al. 2012

@ref: 15491

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Zhihengliuella

species: Zhihengliuella salsuginis

full scientific name: Zhihengliuella salsuginis Chen et al. 2012

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
67771positive
69480positive100

Culture and growth conditions

culture medium

  • @ref: 15491
  • name: RICH MEDIUM (DSMZ Medium 736)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/736
  • composition: Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15491positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.993

murein

  • @ref: 15491
  • murein short key: A11.35
  • type: A4alpha L-Lys-L-Ala-L-Glu

observation

  • @ref: 67771
  • observation: quinones: MK-9 MK-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15491subterranean brine sample, salt mine XiangliHunan ProvinceChinaCHNAsia
67771From subterranean brine from a salt mineHunan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Other#Mine
#Environmental#Aquatic
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_137979.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_158;97_13038;98_16043;99_137979&stattab=map
  • Last taxonomy: Zhihengliuella salsuginis
  • 16S sequence: FJ425902
  • Sequence Identity:
  • Total samples: 14
  • soil counts: 8
  • animal counts: 3
  • plant counts: 3

Safety information

risk assessment

  • @ref: 15491
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15491
  • description: Zhihengliuella salsuginis strain JSM 071043 16S ribosomal RNA gene, partial sequence
  • accession: FJ425902
  • length: 1407
  • database: ena
  • NCBI tax ID: 578222

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zhihengliuella salsuginis KCTC 19466GCA_014651715scaffoldncbi578222
66792Zhihengliuella salsuginis strain KCTC 19466578222.3wgspatric578222

GC content

@refGC-contentmethod
1549167.8high performance liquid chromatography (HPLC)
6777167.8

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.365no
flagellatedno96.266no
gram-positiveyes93.431no
anaerobicno99.414no
aerobicyes95.178yes
halophileyes67.922no
spore-formingno92.629no
thermophileno98.695yes
glucose-utilyes89.97no
glucose-fermentno81.927no

External links

@ref: 15491

culture collection no.: DSM 21149, KCTC 19466, JSM 071043, NBRC 109062

straininfo link

  • @ref: 77229
  • straininfo: 405341

literature

  • topic: Phylogeny
  • Pubmed-ID: 20490581
  • title: Zhihengliuella salsuginis sp. nov., a moderately halophilic actinobacterium from a subterranean brine.
  • authors: Chen YG, Tang SK, Zhang YQ, Liu ZX, Chen QH, He JW, Cui XL, Li WJ
  • journal: Extremophiles
  • DOI: 10.1007/s00792-010-0317-4
  • year: 2010
  • mesh: Gram-Positive Bacteria/classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
15491Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21149)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21149
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77229Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405341.1StrainInfo: A central database for resolving microbial strain identifiers