Strain identifier
BacDive ID: 7786
Type strain:
Species: Zhihengliuella salsuginis
Strain history: <- X-L Cui, Yunnan Inst., China
NCBI tax ID(s): 578222 (species)
General
@ref: 15491
BacDive-ID: 7786
DSM-Number: 21149
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Zhihengliuella salsuginis DSM 21149 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from subterranean brine sample, salt mine Xiangli.
NCBI tax id
- NCBI tax id: 578222
- Matching level: species
strain history
@ref | history |
---|---|
15491 | <- X.-L. Cui, YIM; JSM 071043 <- Y.-G. Chen and H.-D. Xiao |
67771 | <- X-L Cui, Yunnan Inst., China |
doi: 10.13145/bacdive7786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Zhihengliuella
- species: Zhihengliuella salsuginis
- full scientific name: Zhihengliuella salsuginis Chen et al. 2012
@ref: 15491
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Zhihengliuella
species: Zhihengliuella salsuginis
full scientific name: Zhihengliuella salsuginis Chen et al. 2012
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence |
---|---|---|
67771 | positive | |
69480 | positive | 100 |
Culture and growth conditions
culture medium
- @ref: 15491
- name: RICH MEDIUM (DSMZ Medium 736)
- growth: yes
- link: https://mediadive.dsmz.de/medium/736
- composition: Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15491 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.993 |
murein
- @ref: 15491
- murein short key: A11.35
- type: A4alpha L-Lys-L-Ala-L-Glu
observation
- @ref: 67771
- observation: quinones: MK-9 MK-8
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
15491 | subterranean brine sample, salt mine Xiangli | Hunan Province | China | CHN | Asia |
67771 | From subterranean brine from a salt mine | Hunan Province | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Other | #Mine |
#Environmental | #Aquatic | |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_137979.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_158;97_13038;98_16043;99_137979&stattab=map
- Last taxonomy: Zhihengliuella salsuginis
- 16S sequence: FJ425902
- Sequence Identity:
- Total samples: 14
- soil counts: 8
- animal counts: 3
- plant counts: 3
Safety information
risk assessment
- @ref: 15491
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15491
- description: Zhihengliuella salsuginis strain JSM 071043 16S ribosomal RNA gene, partial sequence
- accession: FJ425902
- length: 1407
- database: ena
- NCBI tax ID: 578222
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Zhihengliuella salsuginis KCTC 19466 | GCA_014651715 | scaffold | ncbi | 578222 |
66792 | Zhihengliuella salsuginis strain KCTC 19466 | 578222.3 | wgs | patric | 578222 |
GC content
@ref | GC-content | method |
---|---|---|
15491 | 67.8 | high performance liquid chromatography (HPLC) |
67771 | 67.8 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 92.365 | no |
flagellated | no | 96.266 | no |
gram-positive | yes | 93.431 | no |
anaerobic | no | 99.414 | no |
aerobic | yes | 95.178 | yes |
halophile | yes | 67.922 | no |
spore-forming | no | 92.629 | no |
thermophile | no | 98.695 | yes |
glucose-util | yes | 89.97 | no |
glucose-ferment | no | 81.927 | no |
External links
@ref: 15491
culture collection no.: DSM 21149, KCTC 19466, JSM 071043, NBRC 109062
straininfo link
- @ref: 77229
- straininfo: 405341
literature
- topic: Phylogeny
- Pubmed-ID: 20490581
- title: Zhihengliuella salsuginis sp. nov., a moderately halophilic actinobacterium from a subterranean brine.
- authors: Chen YG, Tang SK, Zhang YQ, Liu ZX, Chen QH, He JW, Cui XL, Li WJ
- journal: Extremophiles
- DOI: 10.1007/s00792-010-0317-4
- year: 2010
- mesh: Gram-Positive Bacteria/classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, *Water Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
15491 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21149) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21149 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
77229 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405341.1 | StrainInfo: A central database for resolving microbial strain identifiers |