Strain identifier
BacDive ID: 7761
Type strain: 
Species: Micrococcus cohnii
Strain Designation: WS 4601
Strain history: <- P. Scherer, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY; WS 4601 <- G. Rieser <- E. Speil
NCBI tax ID(s): 993416 (species)
version 9.1 (current version)
General
@ref: 17465
BacDive-ID: 7761
DSM-Number: 23974
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, coccus-shaped
description: Micrococcus cohnii WS 4601 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from air in a medical practice.
NCBI tax id
- NCBI tax id: 993416
- Matching level: species
strain history
- @ref: 17465
- history: <- P. Scherer, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY; WS 4601 <- G. Rieser <- E. Speil
doi: 10.13145/bacdive7761.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Micrococcus
- species: Micrococcus cohnii
- full scientific name: Micrococcus cohnii Rieser et al. 2013
@ref: 17465
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Micrococcus
species: Micrococcus cohnii
full scientific name: Micrococcus cohnii Rieser et al. 2013
strain designation: WS 4601
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30452 | positive | 1.15 µm | 1.15 µm | coccus-shaped | no | |
| 69480 | no | 93.5 | ||||
| 69480 | positive | 94.391 |
pigmentation
- @ref: 30452
- production: yes
Culture and growth conditions
culture medium
- @ref: 17465
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 17465 | positive | growth | 28 |
| 30452 | positive | growth | 15-37 |
| 30452 | positive | optimum | 26 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30452 | positive | growth | 07-09 | alkaliphile |
| 30452 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 30452
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 30452 | no | |
| 69481 | no | 100 |
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30452 | NaCl | positive | growth | 0-10 % |
| 30452 | NaCl | positive | optimum | 5 % |
murein
- @ref: 17465
- murein short key: A11.04
- type: A3alpha L-Lys-L-Ala
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30452 | 22599 | arabinose | + | carbon source |
| 30452 | 29864 | mannitol | + | carbon source |
| 30452 | 37684 | mannose | + | carbon source |
| 30452 | 28053 | melibiose | + | carbon source |
| 30452 | 26546 | rhamnose | + | carbon source |
| 30452 | 30911 | sorbitol | + | carbon source |
| 30452 | 17234 | glucose | + | carbon source |
| 30452 | 17306 | maltose | + | carbon source |
| 30452 | 17992 | sucrose | + | carbon source |
| 30452 | 27082 | trehalose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30452 | catalase | + | 1.11.1.6 |
| 30452 | gelatinase | + | |
| 30452 | cytochrome oxidase | + | 1.9.3.1 |
| 30452 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 17465
- sample type: air in a medical practice
- geographic location: Bavaria
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Air | #Indoor Air |
| #Infection | #Medical environment | #Medical practice |
taxonmaps
- @ref: 69479
- File name: preview.99_15830.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_453;97_519;98_11940;99_15830&stattab=map
- Last taxonomy: Micrococcus cohnii subclade
- 16S sequence: FR832424
- Sequence Identity:
- Total samples: 5301
- soil counts: 389
- aquatic counts: 371
- animal counts: 4326
- plant counts: 215
Safety information
risk assessment
- @ref: 17465
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17465
- description: Micrococcus cohnii 16S rRNA gene, type strain WS4601T
- accession: FR832424
- length: 1407
- database: nuccore
- NCBI tax ID: 993416
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Micrococcus cohnii DSM 23974 | GCA_014205175 | contig | ncbi | 993416 |
| 66792 | Micrococcus cohnii strain DSM 23974 | 993416.3 | wgs | patric | 993416 |
| 66792 | Micrococcus cohnii DSM 23974 | 2870868549 | draft | img | 993416 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 17465 | 70.4 | high performance liquid chromatography (HPLC) |
| 30452 | 70.4 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 94.391 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.327 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 78.509 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.466 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93.5 | no |
External links
@ref: 17465
culture collection no.: DSM 23974, LMG 26183
straininfo link
- @ref: 77204
- straininfo: 374265
literature
- topic: Phylogeny
- Pubmed-ID: 22328614
- title: Micrococcus cohnii sp. nov., isolated from the air in a medical practice.
- authors: Rieser G, Scherer S, Wenning M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.036434-0
- year: 2012
- mesh: *Air Microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Environment, Controlled, Fatty Acids/analysis, Micrococcus/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17465 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23974) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23974 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30452 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26787 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 77204 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID374265.1 | StrainInfo: A central database for resolving microbial strain identifiers |