Strain identifier

BacDive ID: 7667

Type strain: Yes

Species: Kocuria assamensis

Strain Designation: S9-65

Strain history: <- S. Mayilraj, MTCC; S9-65 <- K. Ishwinder, MTCC 10622

NCBI tax ID(s): 876450 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17475

BacDive-ID: 7667

DSM-Number: 23999

keywords: 16S sequence, Bacteria

description: Kocuria assamensis S9-65 is a bacterium that was isolated from water.

NCBI tax id

  • NCBI tax id: 876450
  • Matching level: species

strain history

  • @ref: 17475
  • history: <- S. Mayilraj, MTCC; S9-65 <- K. Ishwinder, MTCC 10622

doi: 10.13145/bacdive7667.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Kocuria
  • species: Kocuria assamensis
  • full scientific name: Kocuria assamensis Kaur et al. 2011

@ref: 17475

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Kocuria

species: Kocuria assamensis

full scientific name: Kocuria assamensis Kaur et al.

strain designation: S9-65

type strain: yes

Physiology and metabolism

murein

  • @ref: 17475
  • murein short key: A11.06
  • type: A3alpha L-Lys-L-Ala3

Isolation, sampling and environmental information

isolation

  • @ref: 17475
  • sample type: water
  • geographic location: river Brahmaputra, Assam
  • country: India
  • origin.country: IND
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_1750.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_424;97_1160;98_1384;99_1750&stattab=map
  • Last taxonomy: Kocuria palustris
  • 16S sequence: HQ018931
  • Sequence Identity:
  • Total samples: 64026
  • soil counts: 5873
  • aquatic counts: 8089
  • animal counts: 47774
  • plant counts: 2290

Sequence information

16S sequences

  • @ref: 17475
  • description: Kocuria assamensis strain S9-65 16S ribosomal RNA gene, partial sequence
  • accession: HQ018931
  • length: 1425
  • database: ena
  • NCBI tax ID: 876450

GC content

  • @ref: 17475
  • GC-content: 69.2

External links

@ref: 17475

culture collection no.: DSM 23999, MTCC 10622

literature

  • topic: Phylogeny
  • Pubmed-ID: 21234681
  • title: Description of a novel actinobacterium Kocuria assamensis sp. nov., isolated from a water sample collected from the river Brahmaputra, Assam, India.
  • authors: Kaur C, Kaur I, Raichand R, Bora TC, Mayilraj S
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-010-9547-9
  • year: 2011
  • mesh: Actinobacteria/classification/*genetics, Base Composition/genetics, India, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
17475Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23999)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23999
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta