Strain identifier
BacDive ID: 7667
Type strain:
Species: Kocuria assamensis
Strain Designation: S9-65
Strain history: <- S. Mayilraj, MTCC; S9-65 <- K. Ishwinder, MTCC 10622
NCBI tax ID(s): 876450 (species)
version 8.1 (current version)
General
@ref: 17475
BacDive-ID: 7667
DSM-Number: 23999
keywords: 16S sequence, Bacteria
description: Kocuria assamensis S9-65 is a bacterium that was isolated from water.
NCBI tax id
- NCBI tax id: 876450
- Matching level: species
strain history
- @ref: 17475
- history: <- S. Mayilraj, MTCC; S9-65 <- K. Ishwinder, MTCC 10622
doi: 10.13145/bacdive7667.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Kocuria
- species: Kocuria assamensis
- full scientific name: Kocuria assamensis Kaur et al. 2011
@ref: 17475
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Kocuria
species: Kocuria assamensis
full scientific name: Kocuria assamensis Kaur et al.
strain designation: S9-65
type strain: yes
Physiology and metabolism
murein
- @ref: 17475
- murein short key: A11.06
- type: A3alpha L-Lys-L-Ala3
Isolation, sampling and environmental information
isolation
- @ref: 17475
- sample type: water
- geographic location: river Brahmaputra, Assam
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_1750.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_424;97_1160;98_1384;99_1750&stattab=map
- Last taxonomy: Kocuria palustris
- 16S sequence: HQ018931
- Sequence Identity:
- Total samples: 64026
- soil counts: 5873
- aquatic counts: 8089
- animal counts: 47774
- plant counts: 2290
Sequence information
16S sequences
- @ref: 17475
- description: Kocuria assamensis strain S9-65 16S ribosomal RNA gene, partial sequence
- accession: HQ018931
- length: 1425
- database: ena
- NCBI tax ID: 876450
GC content
- @ref: 17475
- GC-content: 69.2
External links
@ref: 17475
culture collection no.: DSM 23999, MTCC 10622
literature
- topic: Phylogeny
- Pubmed-ID: 21234681
- title: Description of a novel actinobacterium Kocuria assamensis sp. nov., isolated from a water sample collected from the river Brahmaputra, Assam, India.
- authors: Kaur C, Kaur I, Raichand R, Bora TC, Mayilraj S
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-010-9547-9
- year: 2011
- mesh: Actinobacteria/classification/*genetics, Base Composition/genetics, India, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Water Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
17475 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23999) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23999 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |