Strain identifier
BacDive ID: 7641
Type strain:
Species: Kocuria rosea
Strain history: CIP <- 1971, CCM <- ATCC <- R.S. Breed, Micrococcus rubens <- Kràl Collection, Micrococcus roseus beta roseo-fulvus 3 <- W. Migula <- O. Bujwid, Micrococcus tetragenes ruber
NCBI tax ID(s): 1275 (species)
General
@ref: 8819
BacDive-ID: 7641
DSM-Number: 20447
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Kocuria rosea DSM 20447 is an aerobe, mesophilic bacterium of the family Micrococcaceae.
NCBI tax id
- NCBI tax id: 1275
- Matching level: species
strain history
@ref | history |
---|---|
8819 | <- K.H. Schleifer <- ATCC <- R.S. Breed (Micrococcus rubens) <- Kral Collection (Micrococcus roseus "beta" roseo-fulvus) <- W. Migula <- O. Bujwid (Micrococcus tetragenes ruber) |
67770 | CCM 679 <-- ATCC 186 <-- R. S. Breed ("Micrococcus rubens") <-- Král Collection <-- W. Migula <-- O. Bujwid. |
122251 | CIP <- 1971, CCM <- ATCC <- R.S. Breed, Micrococcus rubens <- Kràl Collection, Micrococcus roseus beta roseo-fulvus 3 <- W. Migula <- O. Bujwid, Micrococcus tetragenes ruber |
doi: 10.13145/bacdive7641.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Kocuria
- species: Kocuria rosea
- full scientific name: Kocuria rosea (Flügge 1886) Stackebrandt et al. 1995
synonyms
@ref synonym 20215 Kocuria erythromyxa 20215 Deinococcus erythromyxa 20215 Micrococcus roseus 20215 Pelczaria aurantia
@ref: 8819
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Kocuria
species: Kocuria rosea
full scientific name: Kocuria rosea (Flügge 1886) Stackebrandt et al. 1995
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 94.56 | ||
69480 | 100 | positive | ||
122251 | no | positive | coccus-shaped |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18746 | Salmon orange | 10-14 days | 5006 |
18746 | Salmon orange | 10-14 days | 5425 |
18746 | Salmon orange | 10-14 days | 5428 |
18746 | Salmon orange | 10-14 days | 5530 |
18746 | Salmon orange | 10-14 days | ISP 2 |
122251 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18746 | no | ISP 2 |
18746 | no | 5006 |
18746 | no | 5425 |
18746 | no | 5530 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8819 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | yes | https://mediadive.dsmz.de/medium/53 | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water |
18746 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18746 | 5006 | yes | Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes | |
18746 | 5425 | yes | Name: Brain Heart Infusion (BHI) Agar; 5425 Composition: Calf brain infusion 200.0 g/l Beef heart infusion 250.0 g/l Casein (meat) peptone 10.0 g/l Glucose 2.0 g/l NaCl 5.0 g/l Na2HPO4 2.5 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.4 Usage: Maintenance and revitalization Organisms: Dermatophilus congolensis, Nocardia brasieliensis, N. asteroides, Rhodococcus equi, R. fascians, R. rhodochrous, Streptomyces thermoviol aceus subsp. apingens, Coryneform species | |
18746 | 5428 | yes | ||
18746 | 5530 | yes | ||
37340 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
122251 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18746 | positive | optimum | 28 | mesophilic |
8819 | positive | growth | 30 | mesophilic |
37340 | positive | growth | 30 | mesophilic |
44732 | positive | growth | 22-30 | |
67770 | positive | growth | 28 | mesophilic |
122251 | positive | growth | 10-41 | |
122251 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44732 | aerobe |
122251 | obligate aerobe |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.984
compound production
- @ref: 20216
- compound: Putrescine oxidase
murein
- @ref: 8819
- murein short key: A11.07
- type: A3alpha L-Lys-L-Ala4
observation
- @ref: 67770
- observation: quinones: MK-8(H2)
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
68368 | gelatin | - | hydrolysis | 5291 |
68368 | tryptophan | - | energy source | 27897 |
68368 | urea | + | hydrolysis | 16199 |
68368 | citrate | - | assimilation | 16947 |
68368 | ornithine | + | degradation | 18257 |
68368 | lysine | + | degradation | 25094 |
68368 | arginine | + | hydrolysis | 29016 |
122251 | hippurate | + | hydrolysis | 606565 |
122251 | nitrate | + | reduction | 17632 |
122251 | nitrite | - | reduction | 16301 |
122251 | tributyrin | + | hydrolysis | 35020 |
68379 | nitrate | - | reduction | 17632 |
68379 | esculin | + | hydrolysis | 4853 |
68379 | urea | - | hydrolysis | 16199 |
68379 | gelatin | - | hydrolysis | 5291 |
68379 | D-glucose | - | fermentation | 17634 |
68379 | D-ribose | - | fermentation | 16988 |
68379 | D-xylose | - | fermentation | 65327 |
68379 | D-mannitol | - | fermentation | 16899 |
68379 | maltose | - | fermentation | 17306 |
68379 | lactose | - | fermentation | 17716 |
68379 | sucrose | + | fermentation | 17992 |
68379 | glycogen | - | fermentation | 28087 |
68375 | urea | - | hydrolysis | 16199 |
68375 | arginine | - | hydrolysis | 29016 |
68375 | ornithine | - | degradation | 18257 |
68375 | esculin | + | hydrolysis | 4853 |
68375 | D-glucose | - | fermentation | 17634 |
68375 | D-fructose | - | fermentation | 15824 |
68375 | D-mannose | - | fermentation | 16024 |
68375 | maltose | - | fermentation | 17306 |
68375 | lactose | - | fermentation | 17716 |
68375 | trehalose | - | fermentation | 27082 |
68375 | D-mannitol | - | fermentation | 16899 |
68375 | raffinose | - | fermentation | 16634 |
68375 | D-ribose | - | fermentation | 16988 |
68375 | cellobiose | - | fermentation | 17057 |
68375 | nitrate | + | reduction | 17632 |
68375 | sucrose | - | fermentation | 17992 |
68375 | N-acetylglucosamine | - | fermentation | 59640 |
68375 | turanose | - | fermentation | 32528 |
68375 | arabinose | - | fermentation | 22599 |
antibiotic resistance
- @ref: 68375
- ChEBI: 28368
- metabolite: novobiocin
- is antibiotic: yes
- is sensitive: yes
- sensitivity conc.: 1.8 µg
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68375 | 15688 | acetoin | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
122251 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68375 | 15688 | acetoin | - | |
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - | |
122251 | 15688 | acetoin | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68375 | beta-glucuronidase | - | 3.2.1.31 |
68375 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68375 | alkaline phosphatase | - | 3.1.3.1 |
68375 | L-arginine arylamidase | + | |
68375 | beta-galactosidase | - | 3.2.1.23 |
68375 | beta-glucosidase | + | 3.2.1.21 |
68375 | ornithine decarboxylase | - | 4.1.1.17 |
68375 | arginine dihydrolase | - | 3.5.3.6 |
68375 | urease | - | 3.5.1.5 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
122251 | oxidase | + | |
122251 | beta-galactosidase | + | 3.2.1.23 |
122251 | alcohol dehydrogenase | - | 1.1.1.1 |
122251 | gelatinase | - | |
122251 | amylase | - | |
122251 | DNase | - | |
122251 | caseinase | - | 3.4.21.50 |
122251 | catalase | + | 1.11.1.6 |
122251 | coagulase | - | |
122251 | tween esterase | + | |
122251 | gamma-glutamyltransferase | + | 2.3.2.2 |
122251 | lecithinase | - | |
122251 | lipase | - | |
122251 | lysine decarboxylase | - | 4.1.1.18 |
122251 | ornithine decarboxylase | - | 4.1.1.17 |
122251 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
122251 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18746 | - | - | + | - | - | - | + | - | + | - | - | - | - | - | - | - | - | + | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18746 | + | - | + | - | + | + | + | + | - | - | - | - | - | - | + | + | - | - | - | |
122251 | - | + | + | - | + | + | + | + | - | + | + | - | - | - | + | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18746 | + | + | + | + | - | - | + | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122251 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API ID32STA
@ref | URE | ADH Arg | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | NIT | VP | beta GAL | ArgA | PAL | PyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8819 | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122251 | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_2760.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_424;97_1751;98_2142;99_2760&stattab=map
- Last taxonomy: Kocuria
- 16S sequence: X87756
- Sequence Identity:
- Total samples: 7668
- soil counts: 1344
- aquatic counts: 794
- animal counts: 4476
- plant counts: 1054
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8819 | 1 | Risk group (German classification) |
18746 | 1 | Risk group (German classification) |
122251 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 8819
- description: M.roseus 16S rRNA gene
- accession: X87756
- length: 1481
- database: ena
- NCBI tax ID: 1275
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Kocuria rosea ATCC 186 | GCA_006094695 | complete | ncbi | 1275 |
66792 | Kocuria rosea strain ATCC 186 | 1275.9 | wgs | patric | 1275 |
66792 | Kocuria rosea strain ATCC 186 | 1275.17 | complete | patric | 1275 |
66792 | Kocuria rosea strain DSM 20447 | 1275.18 | wgs | patric | 1275 |
66792 | Kocuria rosea DSM 20447 | 2818991576 | draft | img | 1275 |
67770 | Kocuria rosea ATCC 186 | GCA_003124035 | contig | ncbi | 1275 |
67770 | Kocuria rosea DSM 20447 | GCA_006717035 | contig | ncbi | 1275 |
GC content
@ref | GC-content | method |
---|---|---|
8819 | 69.0 | |
67770 | 69 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 81 | no |
motile | no | 93.102 | no |
flagellated | no | 97.869 | no |
gram-positive | yes | 95.589 | no |
anaerobic | no | 99.658 | no |
aerobic | yes | 95.103 | no |
halophile | no | 54.918 | no |
spore-forming | no | 91.121 | no |
glucose-util | yes | 88.54 | no |
thermophile | no | 98.182 | no |
glucose-ferment | no | 84.118 | yes |
External links
@ref: 8819
culture collection no.: DSM 20447, ATCC 186, CCM 679, NCTC 7523, CCUG 4312, IAM 1315, IFO 3768, JCM 11614, BCRC 11044, CECT 5052, CECT 52, CIP 71.15, IAM 14818, IMSNU 11063, IMSNU 21322, JCM 7236, KCCM 40158, KCTC 3137, KCTC 3199, KCTC 3488, LMG 14224, NBRC 3768, NCFB 975, NCIMB 11696, NRRL B-2977, PCM 548, VKM Ac-2200, VKM B-1236, VKM B-1823, NCDO 975
straininfo link
- @ref: 77085
- straininfo: 389298
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10939645 | Pelczaria aurantia ATCC 49321T (=DSM 12801T) is a strain of Kocuria rosea (Flugge 1886) Stackebrandt et al. 1995. | Schumann P, Tindall BJ, Mendrock U, Kramer I, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/00207713-50-4-1421 | 2000 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Micrococcus/chemistry/*classification/genetics, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis | |
Phylogeny | 12656171 | Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. | Reddy GSN, Prakash JSS, Prabahar V, Matsumoto GI, Stackebrandt E, Shivaji S | Int J Syst Evol Microbiol | 10.1099/ijs.0.02336-0 | 2003 | Antarctic Regions, Cyanobacteria/isolation & purification, Ecosystem, Micrococcaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, Pigmentation, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Water Microbiology | Enzymology |
Phylogeny | 16585685 | Kocuria aegyptia sp. nov., a novel actinobacterium isolated from a saline, alkaline desert soil in Egypt. | Li WJ, Zhang YQ, Schumann P, Chen HH, Hozzein WN, Tian XP, Xu LH, Jiang CL | Int J Syst Evol Microbiol | 10.1099/ijs.0.63876-0 | 2006 | Actinobacteria/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, *Desert Climate, Egypt, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Sodium Chloride, *Soil Microbiology | Genetics |
Phylogeny | 16902039 | Kocuria himachalensis sp. nov., an actinobacterium isolated from the Indian Himalayas. | Mayilraj S, Kroppenstedt RM, Suresh K, Saini HS | Int J Syst Evol Microbiol | 10.1099/ijs.0.63915-0 | 2006 | Actinobacteria/*classification/isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, *Soil Microbiology, Species Specificity | Genetics |
22809716 | Radio-resistance in psychrotrophic Kocuria sp. ASB 107 isolated from Ab-e-Siah radioactive spring. | Asgarani E, Soudi MR, Borzooee F, Dabbagh R | J Environ Radioact | 10.1016/j.jenvrad.2012.04.009 | 2012 | Micrococcaceae/*radiation effects, *Radiation, Ionizing, *Ultraviolet Rays | ||
Phylogeny | 26048314 | Kocuria dechangensis sp. nov., an actinobacterium isolated from saline and alkaline soils. | Wang K, Zhang L, Liu Y, Pan Y, Meng L, Xu T, Zhang C, Liu H, Hong S, Huang H, Jiang J | Int J Syst Evol Microbiol | 10.1099/ijs.0.000372 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Micrococcaceae/classification, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/analysis, Soil/chemistry, Soil Microbiology | Genetics |
Phylogeny | 26362332 | Kocuria subflava sp. nov., isolated from marine sediment from the Indian Ocean. | Jiang Z, Zhang WH, Yuan CG, Chen JY, Cao LX, Park DJ, Xiao M, Kim CJ, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0587-z | 2015 | Aerobiosis, Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Indian Ocean, Locomotion, Micrococcaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Genetics |
26671610 | On-chip cell lysis by antibacterial non-leaching reusable quaternary ammonium monolithic column. | Aly Saad Aly M, Gauthier M, Yeow J | Biomed Microdevices | 10.1007/s10544-015-0025-z | 2016 | Allyl Compounds/*chemistry, Anti-Bacterial Agents/*chemistry, Lab-On-A-Chip Devices, Micrococcus luteus/chemistry/*growth & development, Pseudomonas putida/chemistry/*growth & development, Quaternary Ammonium Compounds/*chemistry | ||
Phylogeny | 27902231 | Kocuria oceani sp. nov., isolated from a deep-sea hydrothermal plume. | Zhang L, Xi L, Ruan J, Huang Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001599 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hydrothermal Vents/*microbiology, Micrococcaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Genetics | 29930075 | Genome Sequences for Three Strains of Kocuria rosea, Including the Type Strain. | Trachtenberg AM, Goen AE, MacLea KS | Genome Announc | 10.1128/genomeA.00594-18 | 2018 |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8819 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20447) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20447 | |
18746 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM20447.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
20216 | Curators of the HKI | http://www.leibniz-hki.de/de/ | Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) | |
37340 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10584 | ||
44732 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 4312) | https://www.ccug.se/strain?id=4312 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68368 | Automatically annotated from API 20E | |||
68371 | Automatically annotated from API 50CH acid | |||
68375 | Automatically annotated from API ID32STA | |||
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
77085 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389298.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
122251 | Curators of the CIP | Collection of Institut Pasteur (CIP 71.15) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2071.15 |