Archive BacDiveID:10.13145/bacdive7624.20230509.8.1

Strain identifier

BacDive ID: 7624

Type strain:

Species: Arthrobacter halodurans

Strain history: <- S.-K. Tang and Y.-G. Chen, YIM; JSM 078085

NCBI tax ID(s): 516699 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 15482

BacDive-ID: 7624

DSM-Number: 21081

keywords: 16S sequence, Bacteria, mesophilic

description: Arthrobacter halodurans DSM 21081 is a mesophilic bacterium that was isolated from seawater from tidal flat.

NCBI tax id

NCBI tax id: 516699
Matching level: species

strain history

@ref: 15482
history: <- S.-K. Tang and Y.-G. Chen, YIM; JSM 078085

doi: 10.13145/bacdive7624.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter halodurans
full scientific name: Arthrobacter halodurans Chen et al. 2012

@ref: 15482

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Arthrobacter

species: Arthrobacter halodurans

full scientific name: Arthrobacter halodurans Chen et al. 2012

type strain: yes

Culture and growth conditions

culture medium

@ref: 15482
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 15482
growth: positive
type: growth
temperature: 28
range: mesophilic

Physiology and metabolism

murein

@ref: 15482
murein short key: A11.35
type: A4alpha L-Lys-L-Ala-L-Glu

Isolation, sampling and environmental information

isolation

@ref: 15482
sample type: seawater from tidal flat
geographic location: South China Sea, Naozhou Island
country: China
origin.country: CHN
continent: Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

Safety information

risk assessment

@ref: 15482
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 15482
description: Arthrobacter halodurans strain JSM 078085 16S ribosomal RNA gene, partial sequence
accession: EU583729
length: 1438
database: ena
NCBI tax ID: 516699

GC content

@ref: 15482
GC-content: 63.3
method: high performance liquid chromatography (HPLC)

External links

@ref: 15482

culture collection no.: DSM 21081, KCTC 19430, JSM 078085

straininfo link

@ref: 77068
straininfo: 405352

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	19337850	Arthrobacter halodurans sp. nov., a new halotolerant bacterium isolated from sea water.	Chen YG, Tang SK, Zhang YQ, Li ZY, Yi LB, Wang YX, Li WJ, Cui XL	Antonie Van Leeuwenhoek	10.1007/s10482-009-9336-5	2009	Aerobiosis, Arthrobacter/chemistry/classification/genetics/isolation & purification, Base Composition, Catalase/metabolism, Cell Wall/chemistry, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature	Metabolism
Phylogeny	26908080	Arthrobacter deserti sp. nov., isolated from a desert soil sample.	Hu QW, Chu X, Xiao M, Li CT, Yan ZF, Hozzein WN, Kim CJ, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000986	2016	Arthrobacter/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Desert Climate, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome
Phylogeny	27902303	Arthrobacter ginkgonis sp. nov., an actinomycete isolated from rhizosphere of Ginkgo biloba L.	Cheng J, Zhang MY, Zhao JC, Xu H, Zhang Y, Zhang TY, Wu YY, Zhang YX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001623	2017	Arthrobacter/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ginkgo biloba/microbiology, Glycolipids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry	Transcriptome
Phylogeny	30990394	Specibacter cremeus gen. nov., sp. nov., a new member of the family Micrococcaceae isolated from a natural cave.	Lee SD, Schumann P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003392	2019	Bacterial Typing Techniques, Base Composition, Caves/microbiology, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Micrococcaceae/classification/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title
15482	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21081)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-21081
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
77068	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID405352.1	StrainInfo: A central database for resolving microbial strain identifiers