Strain identifier

BacDive ID: 7621

Type strain: Yes

Species: Haematomicrobium sanguinis

Strain Designation: 741

Strain history: CCUG 46407 <-- S. Bernander KS OS-00481/02 <-- M. Rylander.

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General

@ref: 15501

BacDive-ID: 7621

DSM-Number: 21259

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen

description: Haematomicrobium sanguinis 741 is a microaerophile, mesophilic human pathogen that was isolated from human blood, 63-years old male.

NCBI tax id

NCBI tax idMatching level
479106species
1121020strain

strain history

@refhistory
15501<- G. Funke, Gärtner & Colleagues Laboratories, Ravensburg, Germany;741 <- CCUG, <- M. Rylander, Stockholm
67770CCUG 46407 <-- S. Bernander KS OS-00481/02 <-- M. Rylander.

doi: 10.13145/bacdive7621.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Haematomicrobium
  • species: Haematomicrobium sanguinis
  • full scientific name: Haematomicrobium sanguinis (Mages et al. 2009) Schumann and Busse 2017
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter sanguinis

@ref: 15501

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Haematomicrobium

species: Haematomicrobium sanguinis

full scientific name: Haematomicrobium sanguinis (Mages et al. 2009) Schumann and Busse 2017

strain designation: 741

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 15501
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15501positivegrowth35mesophilic
57195positivegrowth37mesophilic
67770positivegrowth35mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57195
  • oxygen tolerance: microaerophile

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
15501human blood, 63-years old maleStockholmSwedenSWEEurope
57195Human blood,63-yr-old maleStockholmSwedenSWEEurope2002-03-28
67770Human blood (63-year-old male)

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_7071.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3316;97_4066;98_5197;99_7071&stattab=map
  • Last taxonomy: Haematomicrobium sanguinis subclade
  • 16S sequence: EU086805
  • Sequence Identity:
  • Total samples: 2297
  • soil counts: 453
  • aquatic counts: 499
  • animal counts: 1129
  • plant counts: 216

Safety information

risk assessment

  • @ref: 15501
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15501
  • description: Arthrobacter sanguinis strain 741 16S ribosomal RNA gene, partial sequence
  • accession: EU086805
  • length: 1452
  • database: ena
  • NCBI tax ID: 1121020

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Arthrobacter sanguinis DSM 212591121020.3wgspatric1121020
66792Haematomicrobium sanguinis DSM 212592556921096draftimg1121020
67770Haematomicrobium sanguinis DSM 21259GCA_000688395contigncbi1121020

GC content

@refGC-contentmethod
1550161.9sequence analysis
6777061.9genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno92.08no
flagellatedno97.796no
gram-positiveyes90.971no
anaerobicno99.439no
aerobicyes87.224no
halophileno73.498no
spore-formingno93.978no
thermophileno96.065yes
glucose-utilyes89.132no
glucose-fermentno79.162no

External links

@ref: 15501

culture collection no.: DSM 21259, CCUG 46407, JCM 19108

straininfo link

  • @ref: 77065
  • straininfo: 110685

literature

  • topic: Phylogeny
  • Pubmed-ID: 28032539
  • title: Reclassification of Arthrobacter sanguinis (Mages et al. 2009) as Haematomicrobium sanguinis gen. nov., comb. nov.
  • authors: Schumann P, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001763
  • year: 2017
  • mesh: Arthrobacter/*classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitle
15501Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21259)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21259
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
57195Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46407)https://www.ccug.se/strain?id=46407
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77065Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID110685.1StrainInfo: A central database for resolving microbial strain identifiers