Strain identifier
BacDive ID: 7621
Type strain:
Species: Haematomicrobium sanguinis
Strain Designation: 741
Strain history: CCUG 46407 <-- S. Bernander KS OS-00481/02 <-- M. Rylander.
NCBI tax ID(s): 1121020 (strain), 479106 (species)
General
@ref: 15501
BacDive-ID: 7621
DSM-Number: 21259
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Haematomicrobium sanguinis 741 is a microaerophile, mesophilic human pathogen that was isolated from human blood, 63-years old male.
NCBI tax id
NCBI tax id | Matching level |
---|---|
479106 | species |
1121020 | strain |
strain history
@ref | history |
---|---|
15501 | <- G. Funke, Gärtner & Colleagues Laboratories, Ravensburg, Germany;741 <- CCUG, <- M. Rylander, Stockholm |
67770 | CCUG 46407 <-- S. Bernander KS OS-00481/02 <-- M. Rylander. |
doi: 10.13145/bacdive7621.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Haematomicrobium
- species: Haematomicrobium sanguinis
- full scientific name: Haematomicrobium sanguinis (Mages et al. 2009) Schumann and Busse 2017
synonyms
- @ref: 20215
- synonym: Arthrobacter sanguinis
@ref: 15501
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Haematomicrobium
species: Haematomicrobium sanguinis
full scientific name: Haematomicrobium sanguinis (Mages et al. 2009) Schumann and Busse 2017
strain designation: 741
type strain: yes
Culture and growth conditions
culture medium
- @ref: 15501
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15501 | positive | growth | 35 | mesophilic |
57195 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 57195
- oxygen tolerance: microaerophile
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
15501 | human blood, 63-years old male | Stockholm | Sweden | SWE | Europe | |
57195 | Human blood,63-yr-old male | Stockholm | Sweden | SWE | Europe | 2002-03-28 |
67770 | Human blood (63-year-old male) |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_7071.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3316;97_4066;98_5197;99_7071&stattab=map
- Last taxonomy: Haematomicrobium sanguinis subclade
- 16S sequence: EU086805
- Sequence Identity:
- Total samples: 2297
- soil counts: 453
- aquatic counts: 499
- animal counts: 1129
- plant counts: 216
Safety information
risk assessment
- @ref: 15501
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15501
- description: Arthrobacter sanguinis strain 741 16S ribosomal RNA gene, partial sequence
- accession: EU086805
- length: 1452
- database: ena
- NCBI tax ID: 1121020
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Arthrobacter sanguinis DSM 21259 | 1121020.3 | wgs | patric | 1121020 |
66792 | Haematomicrobium sanguinis DSM 21259 | 2556921096 | draft | img | 1121020 |
67770 | Haematomicrobium sanguinis DSM 21259 | GCA_000688395 | contig | ncbi | 1121020 |
GC content
@ref | GC-content | method |
---|---|---|
15501 | 61.9 | sequence analysis |
67770 | 61.9 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 92.08 | no |
flagellated | no | 97.796 | no |
gram-positive | yes | 90.971 | no |
anaerobic | no | 99.439 | no |
aerobic | yes | 87.224 | no |
halophile | no | 73.498 | no |
spore-forming | no | 93.978 | no |
thermophile | no | 96.065 | yes |
glucose-util | yes | 89.132 | no |
glucose-ferment | no | 79.162 | no |
External links
@ref: 15501
culture collection no.: DSM 21259, CCUG 46407, JCM 19108
straininfo link
- @ref: 77065
- straininfo: 110685
literature
- topic: Phylogeny
- Pubmed-ID: 28032539
- title: Reclassification of Arthrobacter sanguinis (Mages et al. 2009) as Haematomicrobium sanguinis gen. nov., comb. nov.
- authors: Schumann P, Busse HJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001763
- year: 2017
- mesh: Arthrobacter/*classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
15501 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21259) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21259 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
57195 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 46407) | https://www.ccug.se/strain?id=46407 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
77065 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID110685.1 | StrainInfo: A central database for resolving microbial strain identifiers |