Strain identifier

BacDive ID: 7616

Type strain: Yes

Species: Glutamicibacter soli

Strain history: <- SW Roh, KRIBB <- Y Sung, KRIBB

NCBI tax ID(s): 453836 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8023

BacDive-ID: 7616

DSM-Number: 19449

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Glutamicibacter soli DSM 19449 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from wastewater reservoir sediment.

NCBI tax id

  • NCBI tax id: 453836
  • Matching level: species

strain history

@refhistory
8023<- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; SYB2
67771<- SW Roh, KRIBB <- Y Sung, KRIBB

doi: 10.13145/bacdive7616.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Glutamicibacter
  • species: Glutamicibacter soli
  • full scientific name: Glutamicibacter soli (Roh et al. 2008) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter soli

@ref: 8023

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Glutamicibacter

species: Glutamicibacter soli

full scientific name: Glutamicibacter soli (Roh et al. 2008) Busse 2016

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: positive

Culture and growth conditions

culture medium

  • @ref: 8023
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8023positivegrowth28mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
8023wastewater reservoir sedimentRepublic of KoreaKORAsia
67771From soilRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Container (Reservoir)
#Engineered#Waste#Wastewater
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_2722.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_1726;98_2111;99_2722&stattab=map
  • Last taxonomy: Glutamicibacter
  • 16S sequence: EF660748
  • Sequence Identity:
  • Total samples: 590
  • soil counts: 74
  • aquatic counts: 82
  • animal counts: 419
  • plant counts: 15

Safety information

risk assessment

  • @ref: 8023
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8023
  • description: Arthrobacter soli strain SYB2 16S ribosomal RNA gene, partial sequence
  • accession: EF660748
  • length: 1401
  • database: ena
  • NCBI tax ID: 453836

GC content

  • @ref: 8023
  • GC-content: 62

External links

@ref: 8023

culture collection no.: DSM 19449, KCTC 19291, SYB 2

straininfo link

  • @ref: 77060
  • straininfo: 399647

literature

  • topic: Phylogeny
  • Pubmed-ID: 18337691
  • title: Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.
  • authors: Roh SW, Sung Y, Nam YD, Chang HW, Kim KH, Yoon JH, Jeon CO, Oh HM, Bae JW
  • journal: J Microbiol
  • DOI: 10.1007/s12275-007-0239-8
  • year: 2008
  • mesh: Arthrobacter/classification/genetics/*isolation & purification/physiology, Base Composition, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Genes, rRNA/genetics, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Waste Disposal, Fluid
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
8023Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19449)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19449
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77060Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399647.1StrainInfo: A central database for resolving microbial strain identifiers