Strain identifier
BacDive ID: 7616
Type strain:
Species: Glutamicibacter soli
Strain history: <- SW Roh, KRIBB <- Y Sung, KRIBB
NCBI tax ID(s): 453836 (species)
General
@ref: 8023
BacDive-ID: 7616
DSM-Number: 19449
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Glutamicibacter soli DSM 19449 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from wastewater reservoir sediment.
NCBI tax id
- NCBI tax id: 453836
- Matching level: species
strain history
@ref | history |
---|---|
8023 | <- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; SYB2 |
67771 | <- SW Roh, KRIBB <- Y Sung, KRIBB |
doi: 10.13145/bacdive7616.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Glutamicibacter
- species: Glutamicibacter soli
- full scientific name: Glutamicibacter soli (Roh et al. 2008) Busse 2016
synonyms
- @ref: 20215
- synonym: Arthrobacter soli
@ref: 8023
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Glutamicibacter
species: Glutamicibacter soli
full scientific name: Glutamicibacter soli (Roh et al. 2008) Busse 2016
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
- @ref: 8023
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8023 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
8023 | wastewater reservoir sediment | Republic of Korea | KOR | Asia |
67771 | From soil | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Built environment | #Container (Reservoir) |
#Engineered | #Waste | #Wastewater |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_2722.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_1726;98_2111;99_2722&stattab=map
- Last taxonomy: Glutamicibacter
- 16S sequence: EF660748
- Sequence Identity:
- Total samples: 590
- soil counts: 74
- aquatic counts: 82
- animal counts: 419
- plant counts: 15
Safety information
risk assessment
- @ref: 8023
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8023
- description: Arthrobacter soli strain SYB2 16S ribosomal RNA gene, partial sequence
- accession: EF660748
- length: 1401
- database: ena
- NCBI tax ID: 453836
GC content
- @ref: 8023
- GC-content: 62
External links
@ref: 8023
culture collection no.: DSM 19449, KCTC 19291, SYB 2
straininfo link
- @ref: 77060
- straininfo: 399647
literature
- topic: Phylogeny
- Pubmed-ID: 18337691
- title: Arthrobacter soli sp. nov., a novel bacterium isolated from wastewater reservoir sediment.
- authors: Roh SW, Sung Y, Nam YD, Chang HW, Kim KH, Yoon JH, Jeon CO, Oh HM, Bae JW
- journal: J Microbiol
- DOI: 10.1007/s12275-007-0239-8
- year: 2008
- mesh: Arthrobacter/classification/genetics/*isolation & purification/physiology, Base Composition, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Genes, rRNA/genetics, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Waste Disposal, Fluid
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8023 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19449) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19449 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
77060 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399647.1 | StrainInfo: A central database for resolving microbial strain identifiers |