Strain identifier

BacDive ID: 7613

Type strain: Yes

Species: Glutamicibacter ardleyensis

Strain Designation: An25

Strain history: M. Chen An25 <-- P. Wang.

NCBI tax ID(s): 225894 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6983

BacDive-ID: 7613

DSM-Number: 17432

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Glutamicibacter ardleyensis An25 is a mesophilic bacterium that was isolated from lake sediment.

NCBI tax id

  • NCBI tax id: 225894
  • Matching level: species

strain history

doi: 10.13145/bacdive7613.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Glutamicibacter
  • species: Glutamicibacter ardleyensis
  • full scientific name: Glutamicibacter ardleyensis (Chen et al. 2005) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter ardleyensis

@ref: 6983

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Glutamicibacter

species: Glutamicibacter ardleyensis

full scientific name: Glutamicibacter ardleyensis (Chen et al. 2005) Busse 2016

strain designation: An25

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6983TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://bacmedia.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41908MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6983positivegrowth25mesophilic
41908positivegrowth30mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8, MK-9

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6983lake sedimentAntarcticaATAAustralia and Oceania
67770Antarctic Ardley lake sediment

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 6983
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6983
  • description: Arthrobacter ardleyensis partial 16S rRNA gene, type strain An25
  • accession: AJ551163
  • length: 1488
  • database: ena
  • NCBI tax ID: 225894

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Glutamicibacter ardleyensis CGMCC 1.3685GCA_014644555scaffoldncbi225894
66792Glutamicibacter ardleyensis strain CGMCC 1.3685225894.3wgspatric225894

GC content

  • @ref: 6983
  • GC-content: 55

External links

@ref: 6983

culture collection no.: DSM 17432, CGMCC 1.3685, JCM 12921

straininfo link

@refpassport
20218http://www.straininfo.net/strains/667312
20218http://www.straininfo.net/strains/555966
20218http://www.straininfo.net/strains/555965

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15834596Arthrobacter ardleyensis sp. nov., isolated from Antarctic lake sediment and deep-sea sediment.Chen M, Xiao X, Wang P, Zeng X, Wang FArch Microbiol10.1007/s00203-005-0772-y2005Aerobiosis, Antarctic Regions, Arthrobacter/*classification/*isolation & purification, Bacterial Typing Techniques, Base Composition, Base Sequence, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/microbiology, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Water MicrobiologyGenetics
Phylogeny25858247Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey.Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.0002352015Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salsola/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6983Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17432)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17432
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41908Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6845
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/