Strain identifier
BacDive ID: 7613
Type strain:
Species: Glutamicibacter ardleyensis
Strain Designation: An25
Strain history: CIP <- 2006, F. Wang, Res. State Ocean. Admin., Xiamen, China: strain An25
NCBI tax ID(s): 225894 (species)
General
@ref: 6983
BacDive-ID: 7613
DSM-Number: 17432
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive
description: Glutamicibacter ardleyensis An25 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from lake sediment.
NCBI tax id
- NCBI tax id: 225894
- Matching level: species
strain history
@ref | history |
---|---|
6983 | <- JCM <- M.Chen An25 <- P.Wang |
41908 | 2006, F. Wang, Res. State Ocean. Admin., Xiamen, China: strain An25 |
67770 | M. Chen An25 <-- P. Wang. |
116481 | CIP <- 2006, F. Wang, Res. State Ocean. Admin., Xiamen, China: strain An25 |
doi: 10.13145/bacdive7613.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Glutamicibacter
- species: Glutamicibacter ardleyensis
- full scientific name: Glutamicibacter ardleyensis (Chen et al. 2005) Busse 2016
synonyms
- @ref: 20215
- synonym: Arthrobacter ardleyensis
@ref: 6983
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Glutamicibacter
species: Glutamicibacter ardleyensis
full scientific name: Glutamicibacter ardleyensis (Chen et al. 2005) Busse 2016
strain designation: An25
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
116481 | positive | rod-shaped | yes |
colony morphology
- @ref: 116481
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6983 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
41908 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
116481 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
116481 | CIP Medium 368 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6983 | positive | growth | 25 | mesophilic |
41908 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116481
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.997 |
observation
- @ref: 67770
- observation: quinones: MK-8, MK-9
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116481 | 17632 | nitrate | + | reduction |
116481 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 116481
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
116481 | oxidase | - | |
116481 | alcohol dehydrogenase | - | 1.1.1.1 |
116481 | catalase | + | 1.11.1.6 |
116481 | lysine decarboxylase | - | 4.1.1.18 |
116481 | ornithine decarboxylase | - | 4.1.1.17 |
116481 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116481 | - | + | + | + | + | + | + | + | - | - | + | + | - | - | - | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
6983 | lake sediment | Antarctica | ATA | Australia and Oceania | |
67770 | Antarctic Ardley lake sediment | ||||
116481 | Environment, Antarctic lake sediment | Antarctica | ATA | Antarctica | 1998 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_16201.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_1726;98_2111;99_16201&stattab=map
- Last taxonomy: Glutamicibacter
- 16S sequence: AJ551163
- Sequence Identity:
- Total samples: 1486
- soil counts: 175
- aquatic counts: 119
- animal counts: 1072
- plant counts: 120
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6983 | 1 | Risk group (German classification) |
116481 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6983
- description: Arthrobacter ardleyensis partial 16S rRNA gene, type strain An25
- accession: AJ551163
- length: 1488
- database: ena
- NCBI tax ID: 225894
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Glutamicibacter ardleyensis CGMCC 1.3685 | GCA_014644555 | scaffold | ncbi | 225894 |
66792 | Glutamicibacter ardleyensis strain CGMCC 1.3685 | 225894.3 | wgs | patric | 225894 |
GC content
- @ref: 6983
- GC-content: 55
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 86.774 | no |
gram-positive | yes | 92.383 | no |
anaerobic | no | 99.262 | no |
aerobic | yes | 95.308 | no |
halophile | no | 74.232 | no |
spore-forming | no | 88.273 | no |
thermophile | no | 99.084 | no |
glucose-util | yes | 86.86 | no |
motile | no | 55.154 | no |
glucose-ferment | no | 87.893 | no |
External links
@ref: 6983
culture collection no.: DSM 17432, CGMCC 1.3685, JCM 12921, CIP 109137
straininfo link
- @ref: 77057
- straininfo: 231846
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15834596 | Arthrobacter ardleyensis sp. nov., isolated from Antarctic lake sediment and deep-sea sediment. | Chen M, Xiao X, Wang P, Zeng X, Wang F | Arch Microbiol | 10.1007/s00203-005-0772-y | 2005 | Aerobiosis, Antarctic Regions, Arthrobacter/*classification/*isolation & purification, Bacterial Typing Techniques, Base Composition, Base Sequence, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/microbiology, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Water Microbiology | Genetics |
Phylogeny | 25858247 | Arthrobacter endophyticus sp. nov., an endophytic actinobacterium isolated from root of Salsola affinis C. A. Mey. | Wang HF, Li L, Zhang YG, Hozzein WN, Zhou XK, Liu WH, Duan YQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000235 | 2015 | Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salsola/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6983 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17432) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17432 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
41908 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6845 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
77057 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID231846.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116481 | Curators of the CIP | Collection of Institut Pasteur (CIP 109137) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109137 |