Strain identifier

BacDive ID: 7600

Type strain: Yes

Species: Glutamicibacter creatinolyticus

Strain Designation: UR-7

Strain history: CIP <- 1998, JCM <- GIFU <- K. Goto: strain UR-7

NCBI tax ID(s): 162496 (species)

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General

@ref: 6135

BacDive-ID: 7600

DSM-Number: 15881

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Glutamicibacter creatinolyticus UR-7 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from human urine.

NCBI tax id

  • NCBI tax id: 162496
  • Matching level: species

strain history

@refhistory
6135<- JCM <- K. Goto; UR-7
67770GIFU 12498 <-- K. Goto UR-7.
118781CIP <- 1998, JCM <- GIFU <- K. Goto: strain UR-7

doi: 10.13145/bacdive7600.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Glutamicibacter
  • species: Glutamicibacter creatinolyticus
  • full scientific name: Glutamicibacter creatinolyticus (Hou et al. 1998) Busse 2016

  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter creatinolyticus

@ref: 6135

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Glutamicibacter

species: Glutamicibacter creatinolyticus

full scientific name: Glutamicibacter creatinolyticus (Hou et al. 1998) Busse 2016

strain designation: UR-7

type strain: yes

Morphology

cell morphology

  • @ref: 118781
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 118781
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6135BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
6135TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41911MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
118781CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
118781CIP Medium 167yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=167
118781CIP Medium 234yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=234

culture temp

@refgrowthtypetemperaturerange
6135positivegrowth37mesophilic
41911positivegrowth37mesophilic
67770positivegrowth37mesophilic
118781positivegrowth10-41
118781nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118781
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
118781NaClpositivegrowth2-10 %
118781NaClnogrowth0 %

murein

  • @ref: 6135
  • murein short key: A11.35
  • type: A4alpha L-Lys-L-Ala-L-Glu

observation

  • @ref: 67770
  • observation: quinones: MK-8, MK-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11878116947citrate-carbon source
1187814853esculin-hydrolysis
118781606565hippurate+hydrolysis
11878117632nitrate+reduction
11878116301nitrite-reduction
11878117632nitrate-respiration

metabolite production

  • @ref: 118781
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11878115688acetoin-
11878117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
118781oxidase-
118781beta-galactosidase-3.2.1.23
118781alcohol dehydrogenase-1.1.1.1
118781gelatinase-
118781amylase-
118781DNase-
118781caseinase-3.4.21.50
118781catalase+1.11.1.6
118781tween esterase-
118781gamma-glutamyltransferase-2.3.2.2
118781lecithinase-
118781lipase-
118781lysine decarboxylase-4.1.1.18
118781ornithine decarboxylase-4.1.1.17
118781phenylalanine ammonia-lyase-4.3.1.24
118781protease-
118781tryptophan deaminase-
118781urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118781-+++-++++-++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118781++-------++--------------------+---------------------+---+--++++--+---++++-+-+-----+--+-+++++++-+++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6135human urineJapanJPNAsia
67770Human urine

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

taxonmaps

  • @ref: 69479
  • File name: preview.99_17636.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_10860;98_13332;99_17636&stattab=map
  • Last taxonomy: Glutamicibacter creatinolyticus subclade
  • 16S sequence: D88211
  • Sequence Identity:
  • Total samples: 10113
  • soil counts: 2360
  • aquatic counts: 1387
  • animal counts: 5476
  • plant counts: 890

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61351Risk group (German classification)
1187811Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6135
  • description: Arthrobacter sp. gene for 16S rRNA, partial sequence
  • accession: D88211
  • length: 1386
  • database: ena
  • NCBI tax ID: 1667

GC content

@refGC-contentmethod
613566-67
6777066high performance liquid chromatography (HPLC)

External links

@ref: 6135

culture collection no.: DSM 15881, CCM 4673, CIP 105749, GIFU 12498, JCM 10102, KCTC 9903, LMG 22054

straininfo link

  • @ref: 77044
  • straininfo: 63058

literature

  • topic: Phylogeny
  • Pubmed-ID: 9731280
  • title: Description of Arthrobacter creatinolyticus sp. nov., isolated from human urine.
  • authors: Hou XG, Kawamura Y, Sultana F, Shu S, Hirose K, Goto K, Ezaki T
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-48-2-423
  • year: 1998
  • mesh: Amino Acids/analysis, Arthrobacter/*classification/genetics/isolation & purification/ultrastructure, Bacteriuria/*microbiology, Base Composition, Base Sequence, Cell Wall/chemistry, DNA, Bacterial, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Sequence Analysis, RNA, Sequence Homology, Nucleic Acid, Vitamin K/metabolism
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6135Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15881)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15881
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41911Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17803
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77044Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID63058.1StrainInfo: A central database for resolving microbial strain identifiers
118781Curators of the CIPCollection of Institut Pasteur (CIP 105749)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105749