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Strain identifier

BacDive ID: 7600

Type strain: Yes

Species: Glutamicibacter creatinolyticus

Strain Designation: UR-7

Strain history: GIFU 12498 <-- K. Goto UR-7.

NCBI tax ID(s): 162496 (species)

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General

@ref: 6135

BacDive-ID: 7600

DSM-Number: 15881

keywords: 16S sequence, Bacteria, mesophilic

description: Glutamicibacter creatinolyticus UR-7 is a mesophilic bacterium that was isolated from human urine.

NCBI tax id

  • NCBI tax id: 162496
  • Matching level: species

strain history

doi: 10.13145/bacdive7600.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Glutamicibacter
  • species: Glutamicibacter creatinolyticus
  • full scientific name: Glutamicibacter creatinolyticus (Hou et al. 1998) Busse 2016

  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter creatinolyticus

@ref: 6135

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Glutamicibacter

species: Glutamicibacter creatinolyticus

full scientific name: Glutamicibacter creatinolyticus (Hou et al. 1998) Busse 2016

strain designation: UR-7

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 97.929

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6135BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
6135TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41911MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
6135positivegrowth37mesophilic
41911positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.655

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 78.97

murein

  • @ref: 6135
  • murein short key: A11.35
  • type: A4alpha L-Lys-L-Ala-L-Glu

observation

  • @ref: 67770
  • observation: quinones: MK-8, MK-9

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6135human urineJapanJPNAsia
67770Human urine

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

taxonmaps

  • @ref: 69479
  • File name: preview.99_17636.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1446;97_10860;98_13332;99_17636&stattab=map
  • Last taxonomy: Glutamicibacter creatinolyticus subclade
  • 16S sequence: D88211
  • Sequence Identity:
  • Total samples: 10113
  • soil counts: 2360
  • aquatic counts: 1387
  • animal counts: 5476
  • plant counts: 890

Safety information

risk assessment

  • @ref: 6135
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6135
  • description: Arthrobacter sp. gene for 16S rRNA, partial sequence
  • accession: D88211
  • length: 1386
  • database: ena
  • NCBI tax ID: 1667

GC content

@refGC-contentmethod
613566-67
6777066high performance liquid chromatography (HPLC)

External links

@ref: 6135

culture collection no.: DSM 15881, CCM 4673, CIP 105749, GIFU 12498, JCM 10102, KCTC 9903, LMG 22054

straininfo link

@refpassport
20218http://www.straininfo.net/strains/381343
20218http://www.straininfo.net/strains/217419
20218http://www.straininfo.net/strains/148617
20218http://www.straininfo.net/strains/148619
20218http://www.straininfo.net/strains/148618
20218http://www.straininfo.net/strains/321984

literature

  • topic: Phylogeny
  • Pubmed-ID: 9731280
  • title: Description of Arthrobacter creatinolyticus sp. nov., isolated from human urine.
  • authors: Hou XG, Kawamura Y, Sultana F, Shu S, Hirose K, Goto K, Ezaki T
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-48-2-423
  • year: 1998
  • mesh: Amino Acids/analysis, Arthrobacter/*classification/genetics/isolation & purification/ultrastructure, Bacteriuria/*microbiology, Base Composition, Base Sequence, Cell Wall/chemistry, DNA, Bacterial, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/analysis, RNA, Ribosomal, 16S/analysis, Sequence Analysis, RNA, Sequence Homology, Nucleic Acid, Vitamin K/metabolism
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6135Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15881)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15881
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41911Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17803
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)