Strain identifier

BacDive ID: 76

Type strain: Yes

Species: Roseomonas aerilata

Strain Designation: 5420S-30

Strain history: CIP <- 2010, KACC: strain 5420S-30 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, South Korea

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8074

BacDive-ID: 76

DSM-Number: 19363

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, coccus-shaped, colony-forming

description: Roseomonas aerilata 5420S-30 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from air.

NCBI tax id

NCBI tax idMatching level
1123060strain
452982species

strain history

@refhistory
403482010, KACC
8074<- S.-W. Kwon, KACC; 5420S-30 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, Korea
67772Kwon S.-W., Korean Agricultural Culture Collection; 5420S-30 < Weon H.-Y., National Institute of Agricultural Science and Technology
116059CIP <- 2010, KACC: strain 5420S-30 <- H.-Y. Weon, Natl. Inst. Agricult. Sci. and Technol., Suwon, South Korea

doi: 10.13145/bacdive76.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas aerilata
  • full scientific name: Roseomonas aerilata Yoo et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Pararoseomonas aerilata

@ref: 8074

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas aerilata

full scientific name: Roseomonas aerilata Yoo et al. 2008

strain designation: 5420S-30

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityconfidence
22961negative1.2-1.5 µmcoccus-shapedno
69480negative99.996
116059negativecoccus-shapedno

colony morphology

  • @ref: 22961
  • colony color: pink
  • colony shape: circular

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8074R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
22961Nutrient agar (NA)yes
22961Reasoner's 2A agar (R2A)yes
40348MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
116059CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

@refgrowthtypetemperaturerange
8074positivegrowth30mesophilic
22961positivegrowth5.0-35.0
22961positiveoptimum30.0mesophilic
40348positivegrowth30mesophilic
67772positiveminimum5psychrophilic
67772positiveoptimum30mesophilic
67772positivemaximum35mesophilic

culture pH

@refabilitytypepHPH range
22961positivegrowth5.0-9.0alkaliphile
22961positiveoptimum6.0-7.0
67772positiveoptimum6.0-7.0
67772positivemaximum9.0
67772positiveminimum5.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
22961obligate aerobe
116059obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.972

halophily

  • @ref: 22961
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: >1.0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
22961168082-dehydro-D-gluconate-builds acid from
22961174265-dehydro-D-gluconate-builds acid from
2296127613amygdalin-builds acid from
2296118305arbutin-builds acid from
2296115963ribitol-builds acid from
2296117108D-arabinose-builds acid from
2296118333D-arabitol-builds acid from
2296117057cellobiose-builds acid from
2296115824D-fructose-builds acid from
2296128847D-fucose-builds acid from
2296112936D-galactose-builds acid from
2296117634D-glucose-builds acid from
2296117716lactose-builds acid from
2296162318D-lyxose-builds acid from
2296117306maltose-builds acid from
2296116899D-mannitol-builds acid from
2296116024D-mannose-builds acid from
229616731melezitose-builds acid from
2296128053melibiose-builds acid from
2296116634raffinose-builds acid from
2296116988D-ribose-builds acid from
2296117992sucrose-builds acid from
2296117924D-sorbitol-builds acid from
2296116443D-tagatose-builds acid from
2296116551D-trehalose-builds acid from
2296132528turanose-builds acid from
2296165327D-xylose-builds acid from
2296116813galactitol-builds acid from
2296117113erythritol-builds acid from
229614853esculin-builds acid from
2296128066gentiobiose-builds acid from
2296124265gluconate-builds acid from
2296117754glycerol-builds acid from
2296128087glycogen-builds acid from
2296117268myo-inositol-builds acid from
2296115443inulin-builds acid from
2296130849L-arabinose-builds acid from
2296118403L-arabitol-builds acid from
2296118287L-fucose-builds acid from
2296162345L-rhamnose-builds acid from
2296117266L-sorbose-builds acid from
2296165328L-xylose-builds acid from
22961320061methyl alpha-D-glucopyranoside-builds acid from
2296143943methyl alpha-D-mannoside-builds acid from
2296174863methyl beta-D-xylopyranoside-builds acid from
22961506227N-acetylglucosamine-builds acid from
2296117814salicin-builds acid from
2296128017starch-builds acid from
2296117151xylitol-builds acid from
2296129016arginine-carbon source
2296185146carboxymethylcellulose-degradation
22961casein-degradation
2296117029chitin-degradation
2296116991dna-degradation
2296117368hypoxanthine-degradation
2296117309pectin-degradation
2296128017starch-degradation
2296118186tyrosine-degradation
2296115318xanthine-degradation
2296117234glucose-fermentation
2296117128adipate-growth
2296127689decanoate-growth
2296117634D-glucose-growth
2296117306maltose-growth
2296116899D-mannitol-growth
2296116024D-mannose-growth
2296124297glucuronate-growth
2296130849L-arabinose-growth
2296125115malate-growth
22961506227N-acetylglucosamine-growth
2296118401phenylacetate-growth
2296153258sodium citrate-growth
229614853esculin-hydrolysis
229615291gelatin-hydrolysis
2296116199urea-hydrolysis
2296117632nitrate-reduction
2296153426tween 80+degradation
22961161933-hydroxybenzoate+growth
22961370543-hydroxybutyrate+growth
229619300suberic acid+growth
11605917632nitrate-reduction
11605916301nitrite-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
229618309polymyxin byesyes300 Unit
2296128971ampicillinyesyes10 µg
2296171321fusidateyesyes10 µg
229616472lincomycinyesyes15 µg
2296128001vancomycinyesyes30 µg
2296117334penicillinyesyes10 Unit
2296117833gentamicinyesyes10 µg
2296117076streptomycinyesyes10 µg
2296148923erythromycinyesyes15 µg
229612637amikacinyesyes30 µg
229613542cephalothinyesyes30 µg
22961204928cefotaximeyesyes30 µg
2296117698chloramphenicolyesyes30 µg
229616104kanamycinyesyes30 µg
22961100147nalidixic acidyesyes30 µg
229617507neomycinyesyes30 µg
2296127902tetracyclineyesyes30 µg
22961100241ciprofloxacinyesyes5 µg
2296128077rifampicinyesyes5 µg

metabolite production

@refChebi-IDmetaboliteproduction
2296135581indoleno
11605935581indoleno

enzymes

@refvalueactivityec
22961acid phosphatase+3.1.3.2
22961alkaline phosphatase+3.1.3.1
22961alpha-chymotrypsin-3.4.21.1
22961alpha-fucosidase-3.2.1.51
22961alpha-galactosidase-3.2.1.22
22961alpha-glucosidase-3.2.1.20
22961alpha-mannosidase-3.2.1.24
22961beta-galactosidase-3.2.1.23
22961beta-glucuronidase-3.2.1.31
22961catalase+1.11.1.6
22961cystine arylamidase-3.4.11.3
22961cytochrome oxidase+1.9.3.1
22961esterase (C 4)+
22961esterase lipase (C 8)+
22961leucine arylamidase-3.4.11.1
22961lipase (C 14)-
22961N-acetyl-beta-glucosaminidase-3.2.1.52
22961naphthol-AS-BI-phosphohydrolase+
22961trypsin-3.4.21.4
22961urease-3.5.1.5
22961valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
116059oxidase+
116059catalase+1.11.1.6
116059urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116059--++-------+--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperaturesampling date
8074airSuwon (37° 16' 46'' N 126° 59' 10'' E)Republic of KoreaKORAsia37.2794126.986
22961R2A agar with 200 mg cycloheximide ml 215 days30
67772Air sampleGyeonggi-do, SuwonRepublic of KoreaKORAsia37.2794126.9862005
116059Environment, Air sampleSuwonRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_83866.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1896;97_9131;98_11193;99_83866&stattab=map
  • Last taxonomy: Roseomonas aerilata
  • 16S sequence: EF661571
  • Sequence Identity:
  • Total samples: 270
  • soil counts: 53
  • aquatic counts: 58
  • animal counts: 39
  • plant counts: 120

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
80741Risk group (German classification)
677721
1160591Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8074
  • description: Roseomonas aerilata strain 5420S-30 16S ribosomal RNA gene, partial sequence
  • accession: EF661571
  • length: 1354
  • database: ena
  • NCBI tax ID: 1123060

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Roseomonas aerilata DSM 193631123060.3wgspatric1123060
66792Roseomonas aerilata DSM 193632565956516draftimg1123060
67772Roseomonas aerilata DSM 19363GCA_000711725contigncbi1123060

GC content

@refGC-contentmethod
807472.1
2296172.1high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes67.552yes
flagellatedno91.089yes
gram-positiveno98.072yes
anaerobicno98.783no
aerobicyes94.048no
halophileno90.656no
spore-formingno94.984no
glucose-utilyes75.825yes
thermophileno97.091yes
glucose-fermentno91.409yes

External links

@ref: 8074

culture collection no.: DSM 19363, KACC 12521, UCCCB24, CIP 110193

straininfo link

  • @ref: 69760
  • straininfo: 354323

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18523199Roseomonas aerilata sp. nov., isolated from an air sample.Yoo SH, Weon HY, Noh HJ, Hong SB, Lee CM, Kim BY, Kwon SW, Go SJInt J Syst Evol Microbiol10.1099/ijs.0.65385-02008*Air Microbiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Methylobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny27983479Roseomonas nepalensis sp. nov., isolated from oil-contaminated soil.Chaudhary DK, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0017272017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Nepal, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny28983692Roseomonas aeriglobus sp. nov., isolated from an air-conditioning system.Lee Y, Jeon COAntonie Van Leeuwenhoek10.1007/s10482-017-0956-x2017*Air Microbiology, *Bacterial Typing Techniques, Base Composition, *Environmental Microbiology, Methylobacteriaceae/*classification/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPhenotype
Phylogeny29458474Roseomonas fluminis sp. nov. isolated from sediment of a shallow stream.Ko Y, Yim J, Hwang WM, Kang K, Ahn TYInt J Syst Evol Microbiol10.1099/ijsem.0.0025782018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Methylobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phosphatidylglycerols/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8074Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19363)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19363
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
22961Seung-Hee Yoo,Hang-Yeon Weon,Hyung-Jun Noh,Seung-Beom Hong,Chang-Muk Lee,Byung-Yong Kim,Soon-Wo Kwon,Seung-Joo Go10.1099/ijs.0.65385-0Roseomonas aerilata sp. nov., isolated from an air sampleIJSEM 58: 1482-1485 200818523199
40348Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8026
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67772Curators of the UCCCBhttps://ucccb.uc.pt/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69760Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID354323.1StrainInfo: A central database for resolving microbial strain identifiers
116059Curators of the CIPCollection of Institut Pasteur (CIP 110193)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110193