Strain identifier
BacDive ID: 7588
Type strain: 
Species: Arthrobacter methylotrophus
Strain Designation: TGA
Strain history: DSM 14008 <-- A. P. Wood strain TGA.
NCBI tax ID(s): 121291 (species)
General
@ref: 5215
BacDive-ID: 7588
DSM-Number: 14008
keywords: 16S sequence, Bacteria, mesophilic
description: Arthrobacter methylotrophus TGA is a mesophilic bacterium that was isolated from soil around roots of Tagetes minuta.
NCBI tax id
- NCBI tax id: 121291
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5215 | <- A. P. Wood; TGA |
| 67770 | DSM 14008 <-- A. P. Wood strain TGA. |
doi: 10.13145/bacdive7588.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter methylotrophus
- full scientific name: Arthrobacter methylotrophus Borodina et al. 2002
@ref: 5215
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter methylotrophus
full scientific name: Arthrobacter methylotrophus Borodina et al. 2002
strain designation: TGA
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5215 | METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939) | yes | https://mediadive.dsmz.de/medium/939 | Name: METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939) Composition: Methanol 7.92 g/l Na2HPO4 x 2 H2O 7.9 g/l KH2PO4 1.5 g/l NH4Cl 0.8 g/l EDTA 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0734 g/l FeSO4 x 7 H2O 0.05 g/l MnCl2 x 4 H2O 0.025 g/l ZnSO4 x 7 H2O 0.01 g/l CoCl2 x 6 H2O 0.005 g/l (NH4)6Mo7O24 0.005 g/l CuSO4 x 5 H2O 0.002 g/l Distilled water |
| 5215 | CORYNEBACTERIUM AGAR (DSMZ Medium 53) | yes | https://mediadive.dsmz.de/medium/53 | Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5215 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | continent |
|---|---|---|---|---|
| 5215 | soil around roots of Tagetes minuta | Tagetes minuta | Warwickshire | Europe |
| 67770 | Soil from the root system of Tagetes minuta | Tagetes minuta |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 5215
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5215
- description: Arthrobacter methylotrophus 16S ribosomal RNA gene, partial sequence
- accession: AF235090
- length: 1459
- database: ena
- NCBI tax ID: 121291
GC content
| @ref | GC-content | method |
|---|---|---|
| 5215 | 61 | |
| 67770 | 61 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 5215
culture collection no.: DSM 14008, JCM 13519, ATCC BAA 111, IAM 15313
straininfo link
- @ref: 77032
- straininfo: 87707
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5215 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14008) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14008 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 77032 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87707.1 | StrainInfo: A central database for resolving microbial strain identifiers |