Strain identifier
BacDive ID: 7583
Type strain:
Species: Pseudoglutamicibacter albus
Strain Designation: CF43, CF 43
Strain history: CIP <- 2000, G. Wauters, UCL, Brussels, Belgium: strain CF 43 <- F. de Boelpaepe
NCBI tax ID(s): 98671 (species)
General
@ref: 4895
BacDive-ID: 7583
DSM-Number: 13068
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Pseudoglutamicibacter albus CF43 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from human blood.
NCBI tax id
- NCBI tax id: 98671
- Matching level: species
strain history
@ref | history |
---|---|
4895 | <- G. Wauters; CF43 <- F. de Boelpaede |
67770 | CIP 106791 <-- G. Wauters CF43 <-- F. de Boelpaepe. |
116202 | CIP <- 2000, G. Wauters, UCL, Brussels, Belgium: strain CF 43 <- F. de Boelpaepe |
doi: 10.13145/bacdive7583.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Pseudoglutamicibacter
- species: Pseudoglutamicibacter albus
- full scientific name: Pseudoglutamicibacter albus (Wauters et al. 2000) Busse 2016
synonyms
- @ref: 20215
- synonym: Arthrobacter albus
@ref: 4895
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Pseudoglutamicibacter
species: Pseudoglutamicibacter albus
full scientific name: Pseudoglutamicibacter albus (Wauters et al. 2000) Busse 2016
strain designation: CF43, CF 43
type strain: yes
Morphology
cell morphology
- @ref: 116202
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18507 | Light ivory (1015) | 10-14 days | ISP 2 |
18507 | Colorless | 10-14 days | ISP 3 |
18507 | Colorless | 10-14 days | ISP 4 |
18507 | Colorless | 10-14 days | ISP 5 |
18507 | Colorless | 10-14 days | ISP 6 |
18507 | Colorless | 10-14 days | ISP 7 |
116202 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18507 | no | ISP 2 |
18507 | no | ISP 3 |
18507 | no | ISP 4 |
18507 | no | ISP 5 |
18507 | no | ISP 6 |
18507 | no | ISP 7 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4895 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
18507 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18507 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
18507 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
18507 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
18507 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
18507 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
41922 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
116202 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18507 | positive | optimum | 28 | mesophilic |
4895 | positive | growth | 30-37 | mesophilic |
41922 | positive | growth | 37 | mesophilic |
56042 | positive | growth | 30-37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
116202 | positive | growth | 25-37 | mesophilic |
116202 | no | growth | 10 | psychrophilic |
116202 | no | growth | 15 | psychrophilic |
116202 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
56042 | aerobe |
116202 | obligate aerobe |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116202 | NaCl | positive | growth | 0-4 % |
116202 | NaCl | no | growth | 6 % |
116202 | NaCl | no | growth | 8 % |
116202 | NaCl | no | growth | 10 % |
murein
- @ref: 4895
- murein short key: A11.35
- type: A4alpha L-Lys-L-Ala-L-Glu
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116202 | 16947 | citrate | - | carbon source |
116202 | 4853 | esculin | - | hydrolysis |
116202 | 606565 | hippurate | + | hydrolysis |
116202 | 17632 | nitrate | - | reduction |
116202 | 16301 | nitrite | - | reduction |
116202 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
antibiotic resistance
- @ref: 116202
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
- @ref: 116202
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
116202 | 15688 | acetoin | - | |
116202 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | trypsin | + | 3.4.21.4 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
116202 | oxidase | + | |
116202 | beta-galactosidase | - | 3.2.1.23 |
116202 | alcohol dehydrogenase | - | 1.1.1.1 |
116202 | gelatinase | - | |
116202 | amylase | + | |
116202 | DNase | + | |
116202 | caseinase | - | 3.4.21.50 |
116202 | catalase | + | 1.11.1.6 |
116202 | tween esterase | - | |
116202 | gamma-glutamyltransferase | + | 2.3.2.2 |
116202 | lecithinase | - | |
116202 | lipase | - | |
116202 | lysine decarboxylase | - | 4.1.1.18 |
116202 | ornithine decarboxylase | - | 4.1.1.17 |
116202 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
116202 | tryptophan deaminase | - | |
116202 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18507 | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18507 | + | - | + | - | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | |
116202 | - | + | + | - | + | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116202 | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|
4895 | human blood | Belgium | BEL | Europe | ||
56042 | Human blood,isolated in several blood cultures | Belgium | BEL | Europe | 1984 | |
67770 | Human blood | |||||
116202 | Human, Blood | Belgium | BEL | Europe | 1984 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_4058.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2056;97_2481;98_3072;99_4058&stattab=map
- Last taxonomy: Pseudoglutamicibacter albus
- 16S sequence: AJ243421
- Sequence Identity:
- Total samples: 12536
- soil counts: 244
- aquatic counts: 505
- animal counts: 11706
- plant counts: 81
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
18507 | 2 | |
4895 | 2 | Risk group (German classification) |
116202 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 4895
- description: Arthrobacter albus partial 16S rRNA gene
- accession: AJ243421
- length: 1501
- database: ena
- NCBI tax ID: 98671
Genome sequences
- @ref: 66792
- description: Pseudoglutamicibacter albus DSM 13068
- accession: 2923410811
- assembly level: draft
- database: img
- NCBI tax ID: 98671
External links
@ref: 4895
culture collection no.: DSM 13068, ATCC BAA 273, CCUG 43812, JCM 11943, CCM 4905, CCUG 44606, CIP 106791, KCTC 9908
straininfo link
- @ref: 77027
- straininfo: 49404
literature
- topic: Phylogeny
- Pubmed-ID: 10835019
- title: Identification of Arthrobacter oxydans, Arthrobacter luteolus sp. nov., and Arthrobacter albus sp. nov., isolated from human clinical specimens.
- authors: Wauters G, Charlier J, Janssens M, Delmee M
- journal: J Clin Microbiol
- DOI: 10.1128/JCM.38.6.2412-2415.2000
- year: 2000
- mesh: Arthrobacter/*classification, Bacterial Typing Techniques, Genes, rRNA, Gram-Positive Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4895 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13068) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13068 | |||
18507 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM13068.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
41922 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18960 | ||||
56042 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 43812) | https://www.ccug.se/strain?id=43812 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
77027 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49404.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116202 | Curators of the CIP | Collection of Institut Pasteur (CIP 106791) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106791 |