Strain identifier
BacDive ID: 7562
Type strain:
Species: Arthrobacter sp.
Strain Designation: FB24
Strain history: <- C. Nakatsu, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- F. Beasley; FB24
NCBI tax ID(s): 1667 (species)
version 8.1 (current version)
General
@ref: 16404
BacDive-ID: 7562
DSM-Number: 22572
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Arthrobacter sp. FB24 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1667
- Matching level: species
strain history
- @ref: 16404
- history: <- C. Nakatsu, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- F. Beasley; FB24
doi: 10.13145/bacdive7562.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter sp.
- full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)
@ref: 16404
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter sp.
strain designation: FB24
type strain: no
Culture and growth conditions
culture medium
- @ref: 16404
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 16404
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16404
- sample type: soil
- geographic location: Indiana, Seymour, INDOT property
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_625.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_99;97_106;98_386;99_625&stattab=map
- Last taxonomy: Arthrobacter
- 16S sequence: DQ157992
- Sequence Identity:
- Total samples: 5810
- soil counts: 2849
- aquatic counts: 364
- animal counts: 580
- plant counts: 2017
Sequence information
16S sequences
- @ref: 16404
- description: Arthrobacter sp. FB24 16S ribosomal RNA gene, partial sequence
- accession: DQ157992
- length: 1516
- database: ena
- NCBI tax ID: 290399
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Arthrobacter sp. FB24 | GCA_000196235 | complete | ncbi | 290399 |
66792 | Arthrobacter sp. FB24 | 290399.46 | plasmid | patric | 290399 |
66792 | Arthrobacter sp. FB24 | 290399.4 | complete | patric | 290399 |
66792 | Arthrobacter sp. FB24 | 290399.44 | plasmid | patric | 290399 |
66792 | Arthrobacter sp. FB24 | 290399.45 | plasmid | patric | 290399 |
66792 | Arthrobacter sp. FB24 | 639633006 | complete | img | 290399 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 88.359 | no |
flagellated | no | 96.921 | no |
gram-positive | yes | 93.902 | no |
anaerobic | no | 99.695 | no |
aerobic | yes | 96.281 | no |
halophile | no | 90.983 | no |
spore-forming | no | 83.83 | no |
thermophile | no | 98.915 | yes |
glucose-util | yes | 83.15 | no |
glucose-ferment | no | 82.338 | no |
External links
@ref: 16404
culture collection no.: DSM 22572
straininfo link
- @ref: 77007
- straininfo: 405003
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16404 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22572) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22572 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
77007 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405003.1 | StrainInfo: A central database for resolving microbial strain identifiers |