Strain identifier

BacDive ID: 7526

Type strain: No

Species: Pseudarthrobacter oxydans

Strain history: <- F. Lingens (Nocardia sp. CBS 2) <- U. Klages

NCBI tax ID(s): 1671 (species)

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General

@ref: 2750

BacDive-ID: 7526

DSM-Number: 6612

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Pseudarthrobacter oxydans DSM 6612 is a mesophilic human pathogen that was isolated from loamy soil.

NCBI tax id

  • NCBI tax id: 1671
  • Matching level: species

strain history

  • @ref: 2750
  • history: <- F. Lingens (Nocardia sp. CBS 2) <- U. Klages

doi: 10.13145/bacdive7526.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Pseudarthrobacter
  • species: Pseudarthrobacter oxydans
  • full scientific name: Pseudarthrobacter oxydans (Sguros 1954) Busse 2016

  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter oxydans

@ref: 2750

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Pseudarthrobacter

species: Pseudarthrobacter oxydans

full scientific name: Pseudarthrobacter oxydans (Sguros 1954) Busse 2016

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2750CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
2750MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)yeshttps://mediadive.dsmz.de/medium/457Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

  • @ref: 2750
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 2750
  • sample type: loamy soil
  • geographic location: near Stuttgart
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1893.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_134;96_1065;97_1243;98_1492;99_1893&stattab=map
  • Last taxonomy: Fervidobacterium changbaicum
  • 16S sequence: EF222229
  • Sequence Identity:
  • Total samples: 161
  • soil counts: 14
  • aquatic counts: 109
  • animal counts: 30
  • plant counts: 8

Safety information

risk assessment

  • @ref: 2750
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Myxococcus stipitatus isolate CBS2B RD 16S ribosomal RNA gene, partial sequenceAF499627720ena83455
20218Burkholderia sp. 3CBS2 16S ribosomal RNA gene, partial sequenceAY267468386ena229319
20218Fervidobacterium sp. CBS-2 16S ribosomal RNA gene, partial sequenceEF2222291501ena424513
20218Vibrio sp. Oct07-TCBS-2BB-4 16S ribosomal RNA gene, partial sequenceGQ215063873ena655934
20218Bacillus sp. KCBS 2 16S ribosomal RNA gene, partial sequenceJN834047484ena1149687

External links

@ref: 2750

culture collection no.: DSM 6612, CBS 2

straininfo link

  • @ref: 76971
  • straininfo: 48249

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2750Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6612)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6612
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76971Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48249.1StrainInfo: A central database for resolving microbial strain identifiers