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Strain identifier

BacDive ID: 7513

Type strain: Yes

Species: Homoserinimonas aerilata

Strain Designation: 5317J-19

Strain history: <- NBRC; NBRC 108729

NCBI tax ID(s): 1162970 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18239

BacDive-ID: 7513

DSM-Number: 26477

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Homoserinimonas aerilata 5317J-19 is a mesophilic bacterium that was isolated from outdoor air.

NCBI tax id

  • NCBI tax id: 1162970
  • Matching level: species

strain history: <- NBRC; NBRC 108729

doi: 10.13145/bacdive7513.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Homoserinimonas
  • species: Homoserinimonas aerilata
  • full scientific name: Homoserinimonas aerilata Kim et al. 2012

@ref: 18239

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Homoserinimonas

species: Homoserinimonas aerilata

full scientific name: Homoserinimonas aerilata Kim et al. 2012

strain designation: 5317J-19

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 94.89

Culture and growth conditions

culture medium

  • @ref: 18239
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 18239
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.335

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.64

Isolation, sampling and environmental information

isolation

  • @ref: 18239
  • sample type: outdoor air
  • geographic location: Jeju Island
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air
  • Cat3: #Outdoor Air

Safety information

risk assessment

  • @ref: 18239
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18239
  • description: Homoserinimonas aerilata strain 5317J-19 16S ribosomal RNA gene, partial sequence
  • accession: JQ639053
  • length: 1469
  • database: ena
  • NCBI tax ID: 1162970

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Homoserinimonas aerilata DSM 26477GCA_006716125contigncbi1162970
66792Homoserinimonas aerilata strain DSM 264771162970.3wgspatric1162970
66792Homoserinimonas aerilata DSM 264772814123039draftimg1162970
66792Xanthomonas oryzae pv. oryzae BXO447GCA_001927545contigpatric64187

GC content

  • @ref: 18239
  • GC-content: 66
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 18239

culture collection no.: DSM 26477, KACC 15522, NBRC 108729

straininfo link

@refpassport
20218http://www.straininfo.net/strains/874161
20218http://www.straininfo.net/strains/874162

literature

  • topic: Phylogeny
  • Pubmed-ID: 22923118
  • title: Homoserinimonas aerilata gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an air sample in Korea.
  • authors: Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Weon HY, Suzuki K, Kwon SW
  • journal: J Microbiol
  • DOI: 10.1007/s12275-012-2096-3
  • year: 2012
  • mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, *Air Microbiology, Amino Acids/analysis, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Temperature, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18239Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26477)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26477
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)