Archive BacDiveID:10.13145/bacdive7513.20221219.7.1

Strain identifier

BacDive ID: 7513

Type strain:

Species: Homoserinimonas aerilata

Strain Designation: 5317J-19

Strain history: <- NBRC; NBRC 108729

NCBI tax ID(s): 1162970 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 18239

BacDive-ID: 7513

DSM-Number: 26477

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Homoserinimonas aerilata 5317J-19 is a mesophilic bacterium that was isolated from outdoor air.

NCBI tax id

NCBI tax id: 1162970
Matching level: species

strain history: <- NBRC; NBRC 108729

doi: 10.13145/bacdive7513.20221219.7.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Microbacteriaceae
genus: Homoserinimonas
species: Homoserinimonas aerilata
full scientific name: Homoserinimonas aerilata Kim et al. 2012

@ref: 18239

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Homoserinimonas

species: Homoserinimonas aerilata

full scientific name: Homoserinimonas aerilata Kim et al. 2012

strain designation: 5317J-19

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: positive
confidence: 94.89

Culture and growth conditions

culture medium

@ref: 18239
name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
growth: yes
link: https://mediadive.dsmz.de/medium/92
composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@ref: 18239
growth: positive
type: growth
temperature: 28
range: mesophilic

Physiology and metabolism

spore formation

@ref: 69480
spore formation: no
confidence: 99.335

halophily

@ref: 69480
halophily level: non-halophilic
confidence: 97.64

Isolation, sampling and environmental information

isolation

@ref: 18239
sample type: outdoor air
geographic location: Jeju Island
country: Republic of Korea
origin.country: KOR
continent: Asia

isolation source categories

Cat1: #Environmental
Cat2: #Air
Cat3: #Outdoor Air

Safety information

risk assessment

@ref: 18239
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 18239
description: Homoserinimonas aerilata strain 5317J-19 16S ribosomal RNA gene, partial sequence
accession: JQ639053
length: 1469
database: ena
NCBI tax ID: 1162970

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Homoserinimonas aerilata DSM 26477	GCA_006716125	contig	ncbi	1162970
66792	Homoserinimonas aerilata strain DSM 26477	1162970.3	wgs	patric	1162970
66792	Homoserinimonas aerilata DSM 26477	2814123039	draft	img	1162970
66792	Xanthomonas oryzae pv. oryzae BXO447	GCA_001927545	contig	patric	64187

GC content

@ref: 18239
GC-content: 66
method: high performance liquid chromatography (HPLC)

External links

@ref: 18239

culture collection no.: DSM 26477, KACC 15522, NBRC 108729

straininfo link

@ref	passport
20218	http://www.straininfo.net/strains/874161
20218	http://www.straininfo.net/strains/874162

literature

topic: Phylogeny
Pubmed-ID: 22923118
title: Homoserinimonas aerilata gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an air sample in Korea.
authors: Kim SJ, Jang YH, Hamada M, Tamura T, Ahn JH, Weon HY, Suzuki K, Kwon SW
journal: J Microbiol
DOI: 10.1007/s12275-012-2096-3
year: 2012
mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, *Air Microbiology, Amino Acids/analysis, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Temperature, Vitamin K 2/analysis
topic2: Genetics

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
18239	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26477)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-26477
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)