Strain identifier

BacDive ID: 7466

Type strain: Yes

Species: Microbacterium neimengense

Strain Designation: 7087

Strain history: DSM 24985 <-- M. Gao 7087.

NCBI tax ID(s): 1126831 (species)

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General

@ref: 17813

BacDive-ID: 7466

DSM-Number: 24985

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Microbacterium neimengense 7087 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from maize rhizosphere soil.

NCBI tax id

  • NCBI tax id: 1126831
  • Matching level: species

strain history

@refhistory
17813<- M. Gao, Agric. Cult. Coll. of China, Inst. Agric. Res. and Regional Planning, Chinese Academy of Agric. Sci., Beijing, PR China; strain 7087
67770DSM 24985 <-- M. Gao 7087.

doi: 10.13145/bacdive7466.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium neimengense
  • full scientific name: Microbacterium neimengense Gao et al. 2013

@ref: 17813

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium neimengense

full scientific name: Microbacterium neimengense Gao et al. 2013

strain designation: 7087

type strain: yes

Morphology

cell morphology

  • @ref: 30531
  • gram stain: positive
  • cell length: 1.4 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30531
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17813
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17813positivegrowth28mesophilic
30531positivegrowth04-50
30531positiveoptimum37mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30531positivegrowth04-10alkaliphile
30531positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30531
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30531
  • spore formation: no

halophily

  • @ref: 30531
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

observation

@refobservation
30531aggregates in clumps
67770quinones: MK-11, MK-10, MK-12

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3053122599arabinose+carbon source
3053117057cellobiose+carbon source
3053128757fructose+carbon source
3053128260galactose+carbon source
3053117234glucose+carbon source
3053117754glycerol+carbon source
3053128087glycogen+carbon source
3053125017leucine+carbon source
3053117306maltose+carbon source
3053129864mannitol+carbon source
3053137684mannose+carbon source
3053128044phenylalanine+carbon source
3053117814salicin+carbon source
3053117992sucrose+carbon source
3053127082trehalose+carbon source
3053118222xylose+carbon source

enzymes

  • @ref: 30531
  • value: acid phosphatase
  • activity: +
  • ec: 3.1.3.2

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17813maize rhizosphere soilNeimeng province, TaipusiqiChinaCHNAsia
67770Rhizosphere of maizeNeimeng ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 17813
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17813
  • description: Microbacterium neimengense strain 7087 16S ribosomal RNA gene, partial sequence
  • accession: JN408293
  • length: 1481
  • database: ena
  • NCBI tax ID: 1126831

GC content

@refGC-contentmethod
1781369.9thermal denaturation, midpoint method (Tm)
3053169.9

External links

@ref: 17813

culture collection no.: DSM 24985, ACCC 03008, JCM 19553

straininfo link

  • @ref: 76911
  • straininfo: 397887

literature

  • topic: Phylogeny
  • Pubmed-ID: 22447697
  • title: Microbacterium neimengense sp. nov., isolated from the rhizosphere of maize.
  • authors: Gao M, Wang M, Zhang YC, Zou XL, Xie LQ, Hu HY, Xu J, Gao JL, Sun JG
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.038166-0
  • year: 2012
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis, Zea mays/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17813Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24985)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24985
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30531Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2686328776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76911Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397887.1StrainInfo: A central database for resolving microbial strain identifiers