Strain identifier

BacDive ID: 7457

Type strain: Yes

Species: Microbacterium arthrosphaerae

Strain Designation: CC-VM-Y, VM-Y

Strain history: CCM 7681 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; CC-VM-Y.

NCBI tax ID(s): 792652 (species)

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General

@ref: 16327

BacDive-ID: 7457

DSM-Number: 22421

keywords: 16S sequence, Bacteria, microaerophile, mesophilic

description: Microbacterium arthrosphaerae CC-VM-Y is a microaerophile, mesophilic bacterium that was isolated from faeces of the pill millipede Arthrosphaera magna Attems.

NCBI tax id

  • NCBI tax id: 792652
  • Matching level: species

strain history

@refhistory
16327<- P. Kämpfer, Univ. Giessen, Germany; VM-Y <- A. B. Arun
67770CCM 7681 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; CC-VM-Y.

doi: 10.13145/bacdive7457.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium arthrosphaerae
  • full scientific name: Microbacterium arthrosphaerae Kämpfer et al. 2011

@ref: 16327

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium arthrosphaerae

full scientific name: Microbacterium arthrosphaerae Kämpfer et al. 2011

strain designation: CC-VM-Y, VM-Y

type strain: yes

Morphology

colony morphology

@refincubation periodcolony colormedium used
615411 day
69224Honey yellow (1005)ISP 6
69224Lemon yellow (1012), ivory (1014)suter with tyrosine
69224Rape yellow (1021)ISP 3
69224Rape yellow (1021)ISP 4
69224Rape yellow (1021)ISP 5
69224Traffic yellow (1023)ISP 2
69224Traffic yellow (1023), light ivory (1015)suter without tyrosine
69224Zinc yellow (1018)ISP 7

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69224noAerial myceliumISP 2
69224noAerial myceliumISP 3
69224noAerial myceliumISP 4
69224noAerial myceliumISP 5
69224noAerial myceliumISP 6
69224noAerial myceliumISP 7
69224noAerial myceliumsuter with tyrosine
69224noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69224noMelanin
69224nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69224DSM_22421_image3.jpegPlates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69224DSM_22421_image4.jpegPlates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
61541positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61541
  • oxygen tolerance: microaerophile

halophily

  • @ref: 69224
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

observation

  • @ref: 67770
  • observation: quinones: MK-13, MK-12

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6922422599arabinose+growth
6922462968cellulose+/-growth
6922428757fructose+/-growth
6922417234glucose+growth
6922417268inositol-growth
6922437684mannose+growth
6922416634raffinose+growth
6922426546rhamnose+growth
6922417992sucrose+growth
6922418222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase+3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase-3.1.3.2
68382trypsin+3.4.21.4
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382alkaline phosphatase-3.1.3.1
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69224++/-+/---++++++--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69224-+/-+-+++/-++/--+/-++-+++++

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentsampling date
16327faeces of the pill millipede Arthrosphaera magna AttemsArthrosphaera magnaIndiaINDAsia
61541Millipede feces,(Arthrosphaera magna Attems)IndiaINDAsia2008
67770Faeces of the pill millipede Arthrosphaera magna Attems from IndiaArthrosphaera magna

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 16327
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16327
  • description: Microbacterium arthrosphaerae partial 16S rRNA gene, strain CC-VM-Y
  • accession: FN870023
  • length: 1339
  • database: ena
  • NCBI tax ID: 792652

External links

@ref: 16327

culture collection no.: DSM 22421, CCM 7681, CCUG 57958, JCM 30492

straininfo link

  • @ref: 76904
  • straininfo: 408701

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20656817Microbacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems.Kampfer P, Rekha PD, Schumann P, Arun AB, Young CC, Chen WM, Sridhar KRInt J Syst Evol Microbiol10.1099/ijs.0.026401-02010Actinomycetales/*classification/genetics/*isolation & purification, Amino Acids/analysis, Animals, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Feces/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysisGenetics
Phylogeny27506590Microbacterium aureliae sp. nov., a novel actinobacterium isolated from Aurelia aurita, the moon jellyfish.Kaur G, Mual P, Kumar N, Verma A, Kumar A, Krishnamurthi S, Mayilraj SInt J Syst Evol Microbiol10.1099/ijsem.0.0014072016Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Scyphozoa/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome
Phylogeny28875898Microbacterium hibisci sp. nov., isolated from rhizosphere of mugunghwa (Hibiscus syriacus L.).Yan ZF, Lin P, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0021672017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Vitamin K 2/chemistryTranscriptome
Phylogeny30575502Microbacterium ureisolvens sp. nov., isolated from a Yellow River sample.Cheng LJ, Ming H, Zhao ZL, Ji WL, Zhang LY, Li LY, Meng XL, Li M, Niu MM, Nie GXInt J Syst Evol Microbiol10.1099/ijsem.0.0032032018Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitle
16327Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22421)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22421
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
61541Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57958)https://www.ccug.se/strain?id=57958
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69224Wink, J.https://cdn.dsmz.de/wink/DSM%2022421.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
76904Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID408701.1StrainInfo: A central database for resolving microbial strain identifiers