Strain identifier
BacDive ID: 7451
Type strain: 
Species: Microbacterium pseudoresistens
Strain Designation: CC-005209, CC-5209
Strain history: CCM 7688 <-- P. Kämpfer CC-5209.
NCBI tax ID(s): 640634 (species)
version 8.1 (current version)
General
@ref: 16198
BacDive-ID: 7451
DSM-Number: 22185
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Microbacterium pseudoresistens CC-005209 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from basidiomycete fungus Agaricus blazei Murill.
NCBI tax id
- NCBI tax id: 640634
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16198 | <- P. Kämpfer, Univ. Giessen, Germany; CC-5209 <- College of Agriculture and Natural Resources, University Taichung; CC-5209 |
| 67770 | CCM 7688 <-- P. Kämpfer CC-5209. |
doi: 10.13145/bacdive7451.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium pseudoresistens
- full scientific name: Microbacterium pseudoresistens Young et al. 2010
@ref: 16198
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium pseudoresistens
full scientific name: Microbacterium pseudoresistens Young et al. 2010
strain designation: CC-005209, CC-5209
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | confidence |
|---|---|---|---|---|---|
| 29488 | positive | 2.5 µm | 1.1 µm | rod-shaped | |
| 69480 | positive | 100 |
colony morphology
- @ref: 61574
- incubation period: 1-2 days
pigmentation
- @ref: 29488
- production: yes
Culture and growth conditions
culture medium
- @ref: 16198
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16198 | positive | growth | 28 | mesophilic |
| 29488 | positive | growth | 25-30 | mesophilic |
| 61574 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 29488 | aerobe |
| 61574 | aerobe |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.962 |
murein
- @ref: 16198
- murein short key: B09
- type: B2alpha {Gly} [L-Orn] D-Glu-D-Orn
observation
- @ref: 67770
- observation: quinones: MK-13
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29488 | 506227 | N-acetylglucosamine | + | carbon source |
| 29488 | 33942 | ribose | + | carbon source |
| 29488 | 17814 | salicin | + | carbon source |
| 29488 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29488 | catalase | + | 1.11.1.6 |
| 29488 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | country | origin.country | continent |
|---|---|---|---|---|---|
| 16198 | basidiomycete fungus Agaricus blazei Murill | Agaricus blazei | Taiwan | TWN | Asia |
| 61574 | Stalk of the mushroom Agaricus brasiliensi | Taiwan | TWN | Asia | |
| 67770 | Stalk of the edible mushroom Agaricus blazei grown in the laboratory | Agaricus blazei |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Fungi |
| #Host Body-Site | #Plant |
Safety information
risk assessment
- @ref: 16198
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16198
- description: Microbacterium pseudoresistens strain CC-005209 16S ribosomal RNA gene, partial sequence
- accession: FJ865214
- length: 1481
- database: ena
- NCBI tax ID: 640634
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Microbacterium pseudoresistens strain DSM 22185 | 640634.3 | wgs | patric | 640634 |
| 66792 | Microbacterium pseudoresistens DSM 22185 | 2844835074 | draft | img | 640634 |
| 67770 | Microbacterium pseudoresistens DSM 22185 | GCA_013409745 | contig | ncbi | 640634 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | yes | 94.137 | yes |
| anaerobic | no | 99.526 | yes |
| halophile | no | 76.449 | no |
| spore-forming | no | 93.612 | no |
| glucose-util | yes | 87.968 | no |
| thermophile | no | 98.702 | yes |
| flagellated | no | 97.689 | no |
| aerobic | yes | 91.506 | yes |
| motile | no | 88.749 | no |
| glucose-ferment | no | 90.147 | no |
External links
@ref: 16198
culture collection no.: DSM 22185, CCM 7688, CCUG 58053, JCM 18707
straininfo link
- @ref: 76899
- straininfo: 402431
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19661494 | Microbacterium agarici sp. nov., Microbacterium humi sp. nov. and Microbacterium pseudoresistens sp. nov., isolated from the base of the mushroom Agaricus blazei. | Young CC, Busse HJ, Langer S, Chu JN, Schumann P, Arun AB, Shen FT, Rekha PD, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijs.0.014092-0 | 2009 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, *Agaricus, Bacterial Typing Techniques, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 31210626 | Microbacterium bovistercoris sp. nov., a novel actinomycete isolated from cow dung. | Ling L, Zhao J, Li X, Zhang X, Jiang H, Guo X, Wang X, Xiang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003511 | 2019 | Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Manure/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16198 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22185) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22185 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29488 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25888 | 28776041 | |
| 61574 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 58053) | https://www.ccug.se/strain?id=58053 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 76899 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402431.1 | StrainInfo: A central database for resolving microbial strain identifiers |