Strain identifier

BacDive ID: 7440

Type strain: Yes

Species: Microbacterium awajiense

Strain Designation: YM13-414

Strain history: DSM 18907 <-- H. Kasai YM13-414.

NCBI tax ID(s): 415214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7767

BacDive-ID: 7440

DSM-Number: 18907

keywords: 16S sequence, Bacteria, mesophilic

description: Microbacterium awajiense YM13-414 is a mesophilic bacterium that was isolated from sand sediment.

NCBI tax id

  • NCBI tax id: 415214
  • Matching level: species

strain history

@refhistory
7767<- Hiroaki Kasai; YM13-414
67770DSM 18907 <-- H. Kasai YM13-414.

doi: 10.13145/bacdive7440.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Microbacterium
  • species: Microbacterium awajiense
  • full scientific name: Microbacterium awajiense Kageyama et al. 2008

@ref: 7767

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Microbacterium

species: Microbacterium awajiense

full scientific name: Microbacterium awajiense Kageyama et al. 2008

strain designation: YM13-414

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7767
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7767positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-12, MK-13, MK-14

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7767sand sedimentAwaji Island, shore of YuraJapanJPNAsia
67770Sediment (at a depth of 20 cm) of the shore of YuraAwaji Island, Hyogo Pref.JapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 7767
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7767
  • description: Microbacterium awajiense gene for 16S rRNA, partial sequence
  • accession: AB286027
  • length: 1469
  • database: ena
  • NCBI tax ID: 415214

GC content

@refGC-contentmethod
776770
6777070high performance liquid chromatography (HPLC)

External links

@ref: 7767

culture collection no.: DSM 18907, JCM 16544, MBIC 08276, KACC 14367, NBRC 103565

straininfo link

  • @ref: 76888
  • straininfo: 406323

Reference

@idauthorscataloguedoi/urltitle
7767Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18907)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18907
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76888Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406323.1StrainInfo: A central database for resolving microbial strain identifiers