Strain identifier
BacDive ID: 7440
Type strain:
Species: Microbacterium awajiense
Strain Designation: YM13-414
Strain history: DSM 18907 <-- H. Kasai YM13-414.
NCBI tax ID(s): 415214 (species)
General
@ref: 7767
BacDive-ID: 7440
DSM-Number: 18907
keywords: 16S sequence, Bacteria, mesophilic
description: Microbacterium awajiense YM13-414 is a mesophilic bacterium that was isolated from sand sediment.
NCBI tax id
- NCBI tax id: 415214
- Matching level: species
strain history
@ref | history |
---|---|
7767 | <- Hiroaki Kasai; YM13-414 |
67770 | DSM 18907 <-- H. Kasai YM13-414. |
doi: 10.13145/bacdive7440.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium awajiense
- full scientific name: Microbacterium awajiense Kageyama et al. 2008
@ref: 7767
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium awajiense
full scientific name: Microbacterium awajiense Kageyama et al. 2008
strain designation: YM13-414
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7767
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7767 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-12, MK-13, MK-14
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
7767 | sand sediment | Awaji Island, shore of Yura | Japan | JPN | Asia |
67770 | Sediment (at a depth of 20 cm) of the shore of Yura | Awaji Island, Hyogo Pref. | Japan | JPN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Sandy |
#Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 7767
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7767
- description: Microbacterium awajiense gene for 16S rRNA, partial sequence
- accession: AB286027
- length: 1469
- database: ena
- NCBI tax ID: 415214
GC content
@ref | GC-content | method |
---|---|---|
7767 | 70 | |
67770 | 70 | high performance liquid chromatography (HPLC) |
External links
@ref: 7767
culture collection no.: DSM 18907, JCM 16544, MBIC 08276, KACC 14367, NBRC 103565
straininfo link
- @ref: 76888
- straininfo: 406323
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7767 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18907) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18907 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
76888 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID406323.1 | StrainInfo: A central database for resolving microbial strain identifiers |