Strain identifier
BacDive ID: 7410
Type strain:
Species: Microbacterium foliorum
Strain Designation: P 333/02, P333/02
Strain history: CIP <- 2001, U. Behrendt, ZALF, Müncheberg, Germany: strain P333/02
NCBI tax ID(s): 104336 (species)
General
@ref: 4869
BacDive-ID: 7410
DSM-Number: 12966
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive, motile, rod-shaped
description: Microbacterium foliorum P 333/02 is a mesophilic, Gram-positive, motile bacterium that was isolated from phyllosphere of grasses.
NCBI tax id
- NCBI tax id: 104336
- Matching level: species
strain history
@ref | history |
---|---|
4869 | <- U. Behrendt; P 333/02 |
38188 | 2001, U. Behrendt, Center for Agricultural Landscape and Land Use Research Müncheberg, Germany: strain P333/02 |
67770 | LMG 19580 <-- DSM 12966 <-- U. Behrendt P 333/02. |
119417 | CIP <- 2001, U. Behrendt, ZALF, Müncheberg, Germany: strain P333/02 |
doi: 10.13145/bacdive7410.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium foliorum
- full scientific name: Microbacterium foliorum Behrendt et al. 2001
@ref: 4869
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium foliorum
full scientific name: Microbacterium foliorum Behrendt et al. 2001 emend. Nouioui et al. 2018
strain designation: P 333/02, P333/02
type strain: yes
Morphology
cell morphology
- @ref: 119417
- gram stain: positive
- cell shape: rod-shaped
- motility: yes
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18373 | Lemon yellow (1012) | 10-14 days | ISP 2 |
18373 | Lemon yellow (1012) | 10-14 days | ISP 3 |
18373 | Lemon yellow (1012) | 10-14 days | ISP 4 |
18373 | Lemon yellow (1012) | 10-14 days | ISP 5 |
18373 | Lemon yellow (1012) | 10-14 days | ISP 6 |
18373 | Lemon yellow (1012) | 10-14 days | ISP 7 |
119417 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18373 | no | ISP 2 |
18373 | no | ISP 3 |
18373 | no | ISP 4 |
18373 | no | ISP 5 |
18373 | no | ISP 6 |
18373 | no | ISP 7 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4869 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
18373 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18373 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
18373 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
18373 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
18373 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
18373 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
38188 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
119417 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18373 | positive | optimum | 28 | mesophilic |
4869 | positive | growth | 28 | mesophilic |
38188 | positive | growth | 25 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
119417 | positive | growth | 10-30 | |
119417 | no | growth | 37 | mesophilic |
119417 | no | growth | 41 | thermophilic |
119417 | no | growth | 45 | thermophilic |
Physiology and metabolism
halophily
- @ref: 119417
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
murein
- @ref: 4869
- murein short key: B06
- type: B2ß {Gly} [L-Hsr] D-Glu(Hyg)-Gly-D-Orn
observation
- @ref: 67770
- observation: quinones: MK-12, MK-11
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | inulin | - | builds acid from | 15443 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | erythritol | - | builds acid from | 17113 |
119417 | citrate | - | carbon source | 16947 |
119417 | esculin | + | hydrolysis | 4853 |
119417 | hippurate | + | hydrolysis | 606565 |
119417 | nitrate | - | reduction | 17632 |
119417 | nitrite | - | reduction | 16301 |
119417 | nitrate | - | respiration | 17632 |
68379 | nitrate | - | reduction | 17632 |
68379 | esculin | + | hydrolysis | 4853 |
68379 | urea | + | hydrolysis | 16199 |
68379 | gelatin | + | hydrolysis | 5291 |
68379 | D-glucose | - | fermentation | 17634 |
68379 | D-ribose | - | fermentation | 16988 |
68379 | D-xylose | - | fermentation | 65327 |
68379 | D-mannitol | - | fermentation | 16899 |
68379 | maltose | - | fermentation | 17306 |
68379 | lactose | - | fermentation | 17716 |
68379 | sucrose | - | fermentation | 17992 |
68379 | glycogen | - | fermentation | 28087 |
antibiotic resistance
- @ref: 119417
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
- @ref: 119417
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
119417 | 15688 | acetoin | - | |
119417 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68379 | gelatinase | + | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
119417 | oxidase | - | |
119417 | beta-galactosidase | + | 3.2.1.23 |
119417 | alcohol dehydrogenase | - | 1.1.1.1 |
119417 | gelatinase | +/- | |
119417 | amylase | + | |
119417 | DNase | + | |
119417 | caseinase | + | 3.4.21.50 |
119417 | catalase | + | 1.11.1.6 |
119417 | tween esterase | - | |
119417 | gamma-glutamyltransferase | - | 2.3.2.2 |
119417 | lecithinase | - | |
119417 | lipase | - | |
119417 | lysine decarboxylase | - | 4.1.1.18 |
119417 | ornithine decarboxylase | - | 4.1.1.17 |
119417 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119417 | protease | + | |
119417 | tryptophan deaminase | - | |
119417 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18373 | - | - | - | - | - | + | + | - | + | + | + | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18373 | - | + | + | - | + | - | - | - | - | - | - | + | + | - | + | + | - | + | - | |
119417 | - | + | + | - | + | + | - | + | - | + | + | + | + | - | + | + | + | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119417 | +/- | - | +/- | +/- | - | +/- | - | - | - | +/- | +/- | +/- | +/- | - | - | - | - | +/- | - | +/- | +/- | - | - | +/- | +/- | +/- | +/- | +/- | - | - | +/- | +/- | - | +/- | - | - | - | - | +/- | +/- | - | - | - | +/- | - | - | +/- | - | +/- |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119417 | + | + | + | + | + | - | - | + | - | + | + | - | - | - | - | + | + | + | + | - | - | - | + | - | - | + | - | - | - | - | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location | isolation date |
---|---|---|---|---|---|---|
4869 | phyllosphere of grasses | Germany | DEU | Europe | ||
67770 | Phyllosphere of grasses | |||||
119417 | Phyllosphere of grasses | Germany | DEU | Europe | Paulinenaue | 1993 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
taxonmaps
- @ref: 69479
- File name: preview.99_791.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_137;97_148;98_165;99_791&stattab=map
- Last taxonomy: Microbacterium
- 16S sequence: AJ249780
- Sequence Identity:
- Total samples: 11128
- soil counts: 2516
- aquatic counts: 1834
- animal counts: 5498
- plant counts: 1280
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4869 | 1 | Risk group (German classification) |
119417 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 4869
- description: Microbacterium foliorum partial 16S rRNA gene, strain DSM 12966
- accession: AJ249780
- length: 1480
- database: ena
- NCBI tax ID: 104336
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Microbacterium foliorum strain DSM 12966 | 104336.4 | wgs | patric | 104336 |
66792 | Microbacterium foliorum DSM 12966 | 2867847951 | draft | img | 104336 |
66792 | Microbacterium foliorum DSM 12966 | 2751185893 | draft | img | 104336 |
67770 | Microbacterium foliorum NRRL B-24224 | GCA_003367705 | complete | ncbi | 104336 |
67770 | Microbacterium foliorum DSM 12966 | GCA_000956415 | contig | ncbi | 104336 |
66792 | Microbacterium foliorum DSM 12966 | GCA_024168445 | contig | ncbi | 104336 |
GC content
@ref | GC-content | method |
---|---|---|
4869 | 67 | high performance liquid chromatography (HPLC) |
67770 | 68.7 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 60.056 | no |
flagellated | no | 90.961 | no |
gram-positive | yes | 92.374 | no |
anaerobic | no | 99.604 | no |
aerobic | yes | 93.145 | no |
halophile | no | 89.623 | no |
spore-forming | no | 89.563 | no |
thermophile | no | 99.643 | yes |
glucose-util | yes | 82.866 | no |
glucose-ferment | no | 90.849 | yes |
External links
@ref: 4869
culture collection no.: DSM 12966, LMG 19580, NRRL B-24224, JCM 11569, CIP 107137, IAM 15188, KCTC 19915, NBRC 103072, NCIMB 14329
straininfo link
- @ref: 76859
- straininfo: 14966
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11491322 | Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov.. | Behrendt U, Ulrich A, Schumann P | Int J Syst Evol Microbiol | 10.1099/00207713-51-4-1267 | 2001 | Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Base Composition, Cell Wall/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, Poaceae/microbiology, Species Specificity | Metabolism |
Phylogeny | 16166712 | Microbacterium xylanilyticum sp. nov., a xylan-degrading bacterium isolated from a biofilm. | Kim KK, Park HY, Park W, Kim IS, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.63706-0 | 2005 | Actinomycetales/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Biodegradation, Environmental, Biofilms/*growth & development, *Bioreactors, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Waste Disposal, Fluid/*methods, Xylans/*metabolism | Genetics |
Phylogeny | 22199224 | Microbacterium murale sp. nov., isolated from an indoor wall. | Kampfer P, Schafer J, Lodders N, Martin K | Int J Syst Evol Microbiol | 10.1099/ijs.0.037705-0 | 2011 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Environmental Microbiology, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Genetics | 29650566 | Genome Sequences of Ilzat and Eleri, Two Phages Isolated Using Microbacterium foliorum NRRL B-24224. | Ali I, Jones AE, Mohamed A, Sivanathan V | Genome Announc | 10.1128/genomeA.00144-18 | 2018 | Phylogeny | |
Genetics | 30637400 | Genome Sequences of Three Microbacterium Phages Isolated from Flowers. | Iles KS, Zack KM, Betsko AJ, Garlena RA, Russell DA, Fetters A, Jacobs-Sera D, Ashman TL, Hatfull GF | Microbiol Resour Announc | 10.1128/MRA.01468-18 | 2019 | Phylogeny | |
Genetics | 30714032 | Complete Genome Sequence of Microbacterium foliorum NRRL B-24224, a Host for Bacteriophage Discovery. | Russell DA, Garlena RA, Hatfull GF | Microbiol Resour Announc | 10.1128/MRA.01467-18 | 2019 | Pathogenicity | |
Genetics | 33184160 | Genome Sequences of Bacteriophages ClearAsMud and Kauala, Isolated from Microbacterium foliorum. | Lin H, Reeves M, Acevedo M, Bass K, Chau E, Ching B, Enriquez E, Evans S, Mamora K, Pang C, Santos M, Tafoya C, Vaca M, Van Iderstein W, Velasco L, Williams V, Yonemoto G, Yonemoto T, Choi J, Dean N, Diaz A | Microbiol Resour Announc | 10.1128/MRA.01026-20 | 2020 | Phylogeny | |
Genetics | 33479002 | Complete Genome Sequence of Microbacterium Bacteriophage Erla. | Milhaven M, Hastings E, Brister D, Cevallos L, Chilukuri S, Diyya A, Garg A, Hernandez R, Kelly D, Lazo K, Le J, Maag G, Marfatia PD, Mehta R, Nejad A, Porche J, Queiroz A, Sackett D, Santos Molina P, Slade T, So M, Thakur K, Urquidez Negrete A, Wackett S, Weiss S, McCarthy L, Wheaton K, Rudner AD, McCutcheon JP, Pfeifer SP | Microbiol Resour Announc | 10.1128/MRA.01354-20 | 2021 | ||
Genetics | 34264121 | Genome Sequences of Akoni, Ashton, and Truong, Podoviridae Bacteriophages Isolated from Microbacterium foliorum. | Fakhre F, Gonzalez RM, Howells EK, Otero L, Pegoraro KN, Robichaux KC, Rodier A, Sadowski CL, Carter VP, Gray AD, Klein GC, Lebosada C, Miklaszewski CM, Sutton SN, Chase MA, Coleman CN, Corbett B, Cunha MO, Daffner M, Deam CJ, Deloso LJ, DeSomma AM, Pinera Gallardo J, Horne ME, Kanahan O, Lam V, Morgan RT, Mustor EM, Ricardo-Iglesias M, Sartorio CJ, Sciacchitano AR, Tvenstrup AW, Wood AR, Pollenz RS | Microbiol Resour Announc | 10.1128/MRA.00516-21 | 2021 | Phylogeny | |
Genetics | 34913713 | Complete Genome Sequence of Bacteriophage IndyLu, Isolated from a Microbacterium foliorum Culture. | Suris A, Alvarado S, Butler T, Canales C, Castro M, Gaston J, Goppert M, Huckaby R, Laposky J, Lee J, Mullins E, Ustundag D, Zuniga J, Cox F, Edwards D | Microbiol Resour Announc | 10.1128/MRA.01079-21 | 2021 | Phylogeny | |
Genetics | 35743053 | Characterization of Phages YuuY, KaiHaiDragon, and OneinaGillian Isolated from Microbacterium foliorum. | Kim U, Paul ES, Diaz A | Int J Mol Sci | 10.3390/ijms23126609 | 2022 | *Actinomycetales, *Bacteriophages/genetics, Genome, Viral, Genomics, Host Specificity, Microbacterium | Phylogeny |
Genetics | 36121218 | Annotation of the Complete Genome Sequences of Bacteriophages Sara and Birdfeeder. | Adams BM, Adams JB, Brewster RL, Cutler MS, Davis AE, Gallegos AH, Hernandez JS, May LH, Montoya EG, Reagan AT, Shurley JF, Grinath AS, Thomas MA | Microbiol Resour Announc | 10.1128/mra.00780-22 | 2022 | ||
Genetics | 36154145 | Complete Genome Sequence of Bacteriophage Eula, Isolated on Microbacterium foliorum. | Cook T, Raffan S, Born T, Breece C, Chandler I, DiLeo H, Eudy A, Lyon K, Nicholson C, Serrano A, Sigmon M, Stevenson S, Townsell K, Van Patten G, Leonard JE, Collins DP | Microbiol Resour Announc | 10.1128/mra.00728-22 | 2022 | Phylogeny | |
Genetics | 36197284 | Genome Sequence and Characteristics of the Microbacterium foliorum Cluster EE Bacteriophage Burgy. | Van Roekel HF, Georgen JJ, Kock RA, Coleman ST | Microbiol Resour Announc | 10.1128/mra.00912-22 | 2022 | ||
Genetics | 36227095 | Genome Sequences of Microbacterium foliorum Phages Anseraureola, Pondwater, and Yasuo. | Bamgbowu D, Bsoumai J, Butura J, Cady E, Cholod G, Collibee I, Dompreh L, Eisner S, Elmaleh M, Fitzgerald K, Gillis E, Horgan A, Judd D, Keefe J, Kovalski E, LaBianca K, Lee P, Lin F, Maiuri H, McDonald C, McKnight A, Meseerole M, Mizra F, Monger E, Moore E, Nguyen N, Noel B, O'Connor D, Pagani R, Palmgren M, Pan K, Pech B, Qian J, Rastegar S, Simas B, Southard A, Tracy M, Vuong H, Whelan S, Zou A, Punska E, Pause R, Zhang F, Ribbe A, Chien P, Rocheleau J | Microbiol Resour Announc | 10.1128/mra.00849-22 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4869 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12966) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12966 | |||
18373 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM12966.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
38188 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4540 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76859 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14966.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119417 | Curators of the CIP | Collection of Institut Pasteur (CIP 107137) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107137 |