Strain identifier

BacDive ID: 7327

Type strain: No

Species: Frigoribacterium faeni

Strain Designation: 301

Strain history: <- M.A. Andersson; 301

NCBI tax ID(s): 145483 (species)

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General

@ref: 3898

BacDive-ID: 7327

DSM-Number: 10311

keywords: 16S sequence, Bacteria, mesophilic

description: Frigoribacterium faeni 301 is a mesophilic bacterium that was isolated from hay dust.

NCBI tax id

  • NCBI tax id: 145483
  • Matching level: species

strain history

  • @ref: 3898
  • history: <- M.A. Andersson; 301

doi: 10.13145/bacdive7327.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Frigoribacterium
  • species: Frigoribacterium faeni
  • full scientific name: Frigoribacterium faeni Kämpfer et al. 2000

@ref: 3898

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Frigoribacterium

species: Frigoribacterium faeni

full scientific name: Frigoribacterium faeni Kämpfer et al. 2000

strain designation: 301

type strain: no

Culture and growth conditions

culture medium

  • @ref: 3898
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 3898
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

murein

  • @ref: 3898
  • murein short key: B14
  • type: B2ß {Gly} [L-Hsr] D-Glu-D-Lys

Isolation, sampling and environmental information

isolation

  • @ref: 3898
  • sample type: hay dust
  • country: Finland
  • origin.country: FIN
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Dust
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_187.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_133;97_144;98_161;99_187&stattab=map
  • Last taxonomy: Microbacteriaceae
  • 16S sequence: AF157479
  • Sequence Identity:
  • Total samples: 14126
  • soil counts: 4109
  • aquatic counts: 1587
  • animal counts: 4245
  • plant counts: 4185

Safety information

risk assessment

  • @ref: 3898
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3898
  • description: Frigoribacterium sp. 301 16S ribosomal RNA gene, partial sequence
  • accession: AF157479
  • length: 1467
  • database: ena
  • NCBI tax ID: 98159

GC content

  • @ref: 3898
  • GC-content: 71.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 3898

culture collection no.: DSM 10311

straininfo link

  • @ref: 76777
  • straininfo: 48806

Reference

@idauthorscataloguedoi/urltitle
3898Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76777Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48806.1StrainInfo: A central database for resolving microbial strain identifiers