Strain identifier

BacDive ID: 73

Type strain: Yes

Species: Roseomonas vinacea

Strain history: Zhang Y.-Q. Chinese Academy of Medical Sciences and Peking Union Medical College

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8073

BacDive-ID: 73

DSM-Number: 19362

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Roseomonas vinacea DSM 19362 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil.

NCBI tax id

NCBI tax idMatching level
1123064strain
424704species

strain history

@refhistory
8073<- Y.-Q. Zhang, Inst. Med. Biotechnol., Chinese Academy of Med. Sci. and Peking Union Med. College, Beijing; CPCC 100056 <- Y.-Q. Zhang et al.
67772Zhang Y.-Q. Chinese Academy of Medical Sciences and Peking Union Medical College

doi: 10.13145/bacdive73.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Roseomonas
  • species: Roseomonas vinacea
  • full scientific name: Roseomonas vinacea Zhang et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Pararoseomonas vinacea

@ref: 8073

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Roseomonas

species: Roseomonas vinacea

full scientific name: Roseomonas vinacea Zhang et al. 2008

type strain: yes

Morphology

cell morphology

  • @ref: 22960
  • gram stain: negative
  • cell length: 0.9-2.2 µm
  • cell width: 0.9-1.0 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 22960
  • colony size: 0.7-1.0 mm
  • colony color: opaque
  • colony shape: circular
  • incubation period: 3 days
  • medium used: ISP2 agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8073R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
22960ISP2yes
22960ISP2 agaryes
22960ISP5yes
22960Reasoner's 2A agar (R2A)yes
22960Tryptic Soy Agaryes

culture temp

@refgrowthtypetemperaturerange
8073positivegrowth28mesophilic
22960positivegrowth4.0-40.0
22960positiveoptimum30.0-32.0mesophilic
67772positiveoptimum30-32mesophilic
67772positiveminimum4psychrophilic
67772positivemaximum40thermophilic

culture pH

@refabilitytypepH
22960positivegrowth6.5-8.0
22960positiveoptimum7.0-7.5
67772positiveoptimum7.0-7.5
67772positivemaximum8.0
67772positiveminimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 22960
  • oxygen tolerance: aerobe

spore formation

  • @ref: 22960
  • spore formation: no

halophily

  • @ref: 22960
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <2.0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
22960168082-dehydro-D-gluconate-builds acid from
22960174265-dehydro-D-gluconate-builds acid from
2296027613amygdalin-builds acid from
2296018305arbutin-builds acid from
2296015963ribitol-builds acid from
2296017108D-arabinose-builds acid from
2296018333D-arabitol-builds acid from
2296017057cellobiose-builds acid from
2296015824D-fructose-builds acid from
2296028847D-fucose-builds acid from
2296012936D-galactose-builds acid from
2296017716lactose-builds acid from
2296062318D-lyxose-builds acid from
2296017306maltose-builds acid from
2296016899D-mannitol-builds acid from
2296016024D-mannose-builds acid from
229606731melezitose-builds acid from
2296028053melibiose-builds acid from
2296016634raffinose-builds acid from
2296017992sucrose-builds acid from
2296017924D-sorbitol-builds acid from
2296016443D-tagatose-builds acid from
2296016551D-trehalose-builds acid from
2296032528turanose-builds acid from
2296065327D-xylose-builds acid from
2296016813galactitol-builds acid from
2296017113erythritol-builds acid from
229604853esculin-builds acid from
2296028066gentiobiose-builds acid from
2296024265gluconate-builds acid from
2296017754glycerol-builds acid from
2296028087glycogen-builds acid from
2296017268myo-inositol-builds acid from
2296015443inulin-builds acid from
2296018403L-arabitol-builds acid from
2296018287L-fucose-builds acid from
2296017266L-sorbose-builds acid from
2296065328L-xylose-builds acid from
22960320061methyl alpha-D-glucopyranoside-builds acid from
2296043943methyl alpha-D-mannoside-builds acid from
2296074863methyl beta-D-xylopyranoside-builds acid from
22960506227N-acetylglucosamine-builds acid from
2296017814salicin-builds acid from
2296028017starch-builds acid from
2296017151xylitol-builds acid from
2296012936D-galactose-carbon source
2296065327D-xylose-carbon source
2296028757fructose-carbon source
2296017754glycerol-carbon source
2296053258sodium citrate-carbon source
2296017234glucose-fermentation
22960casein-hydrolysis
229604853esculin-hydrolysis
229605291gelatin-hydrolysis
2296028017starch-hydrolysis
2296016301nitrite-reduction
2296017634D-glucose+carbon source
2296016899D-mannitol+carbon source
2296016024D-mannose+carbon source
2296016988D-ribose+carbon source
2296030849L-arabinose+carbon source
2296062345L-rhamnose+carbon source
2296028053melibiose+carbon source
2296033942ribose+carbon source
2296053424tween 20+hydrolysis
2296053426tween 80+hydrolysis
2296017632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
229602637amikacinyesyes
22960100241ciprofloxacinyesyes
2296048923erythromycinyesyes
2296017833gentamicinyesyes
2296018208penicillin gyesyes
229608309polymyxin byesyes
2296017076streptomycinyesyes
2296028001vancomycinyesyes
2296017698chloramphenicolyesyes
2296027644chlortetracyclinyesyes
229606104kanamycinyesyes
22960100147nalidixic acidyesyes
229607528netilmycinyesyes
2296028368novobiocinyesyes
2296016869oleandomycinyesyes
2296027701oxytetracyclineyesyes
2296027902tetracyclineyesyes
2296028864tobramycinyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2296089634melaninno
2296035581indoleno
2296016136hydrogen sulfideno
2296015688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
2296015688acetoin-
2296017234glucose-

enzymes

@refvalueactivityec
22960acid phosphatase-3.1.3.2
22960Alkaline phosphatase+3.1.3.1
22960alpha-chymotrypsin-3.4.21.1
22960alpha-fucosidase-3.2.1.51
22960alpha-galactosidase-3.2.1.22
22960alpha-glucosidase-3.2.1.20
22960alpha-mannosidase-3.2.1.24
22960arginine dihydrolase-3.5.3.6
22960beta-galactosidase-3.2.1.23
22960beta-glucosidase-3.2.1.21
22960beta-glucuronidase-3.2.1.31
22960catalase+1.11.1.6
22960cystine arylamidase+3.4.11.3
22960cytochrome oxidase+1.9.3.1
22960DNase-
22960esterase (C 4)+
22960esterase lipase (C 8)+
22960leucine arylamidase-3.4.11.1
22960lipase (C 14)+
22960N-acetyl-beta-glucosaminidase-3.2.1.52
22960naphthol-AS-BI-phosphohydrolase+
22960trypsin-3.4.21.4
22960urease-3.5.1.5
22960valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperatureisolation proceduresampling date
8073forest soilQinghai Province, Qinghai–Tibet plateauChinaCHNAsia
22960soil sampleISP2 broth5 days32.0shake flasks (about 150 r.p.m.)
67772Forest soilQinghai-Tibet plateauChinaCHNAsia2005

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_15136.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1896;97_9332;98_11452;99_15136&stattab=map
  • Last taxonomy: Roseomonas vinacea subclade
  • 16S sequence: EF368368
  • Sequence Identity:
  • Total samples: 3387
  • soil counts: 657
  • aquatic counts: 415
  • animal counts: 1985
  • plant counts: 330

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
80731Risk group (German classification)
677721

Sequence information

16S sequences

  • @ref: 8073
  • description: Roseomonas vinaceus strain CPCC 100056 16S ribosomal RNA gene, partial sequence
  • accession: EF368368
  • length: 1421
  • database: ena
  • NCBI tax ID: 424704

Genome sequences

  • @ref: 66792
  • description: Roseomonas vinacea DSM 19362
  • accession: 2574179773
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1123064

GC content

@refGC-contentmethod
807367.3
2296067.3thermal denaturation, midpoint method (Tm)

External links

@ref: 8073

culture collection no.: DSM 19362, CCM 7468, KCTC 22045, CPCC 100056, UCCCB25

straininfo link

  • @ref: 69757
  • straininfo: 396875

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18768606Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample.Zhang YQ, Yu LY, Wang D, Liu HY, Sun CH, Jiang W, Zhang YQ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.65789-02008Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Locomotion, Methylobacteriaceae/*classification/*isolation & purification, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil MicrobiologyGenetics
Phylogeny27983479Roseomonas nepalensis sp. nov., isolated from oil-contaminated soil.Chaudhary DK, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0017272017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Nepal, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny28983692Roseomonas aeriglobus sp. nov., isolated from an air-conditioning system.Lee Y, Jeon COAntonie Van Leeuwenhoek10.1007/s10482-017-0956-x2017*Air Microbiology, *Bacterial Typing Techniques, Base Composition, *Environmental Microbiology, Methylobacteriaceae/*classification/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPhenotype
Phylogeny28984215Roseomonas terricola sp. nov., isolated from agricultural soil.Kim DU, Lee H, Kim SG, Ka JOInt J Syst Evol Microbiol10.1099/ijsem.0.0023892017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8073Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19362)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19362
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
22960Yu-Qin Zhang, Li-Yan Yu,Dong Wang,Hong-Yu Liu,Cheng-Hang Sun,Wei Jiang,Yue-Qin Zhang,Wen-Jun Li10.1099/ijs.0.65789-0Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sampleIJSEM 58: 2070-2074 200818768606
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67772Curators of the UCCCBhttps://ucccb.uc.pt/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69757Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID396875.1StrainInfo: A central database for resolving microbial strain identifiers