Strain identifier
BacDive ID: 73
Type strain:
Species: Roseomonas vinacea
Strain history: Zhang Y.-Q. Chinese Academy of Medical Sciences and Peking Union Medical College
NCBI tax ID(s): 1123064 (strain), 424704 (species)
General
@ref: 8073
BacDive-ID: 73
DSM-Number: 19362
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming
description: Roseomonas vinacea DSM 19362 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1123064 | strain |
424704 | species |
strain history
@ref | history |
---|---|
8073 | <- Y.-Q. Zhang, Inst. Med. Biotechnol., Chinese Academy of Med. Sci. and Peking Union Med. College, Beijing; CPCC 100056 <- Y.-Q. Zhang et al. |
67772 | Zhang Y.-Q. Chinese Academy of Medical Sciences and Peking Union Medical College |
doi: 10.13145/bacdive73.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas vinacea
- full scientific name: Roseomonas vinacea Zhang et al. 2008
synonyms
- @ref: 20215
- synonym: Pararoseomonas vinacea
@ref: 8073
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas vinacea
full scientific name: Roseomonas vinacea Zhang et al. 2008
type strain: yes
Morphology
cell morphology
- @ref: 22960
- gram stain: negative
- cell length: 0.9-2.2 µm
- cell width: 0.9-1.0 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 22960
- colony size: 0.7-1.0 mm
- colony color: opaque
- colony shape: circular
- incubation period: 3 days
- medium used: ISP2 agar
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8073 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
22960 | ISP2 | yes | ||
22960 | ISP2 agar | yes | ||
22960 | ISP5 | yes | ||
22960 | Reasoner's 2A agar (R2A) | yes | ||
22960 | Tryptic Soy Agar | yes |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8073 | positive | growth | 28 | mesophilic |
22960 | positive | growth | 4.0-40.0 | |
22960 | positive | optimum | 30.0-32.0 | mesophilic |
67772 | positive | optimum | 30-32 | mesophilic |
67772 | positive | minimum | 4 | psychrophilic |
67772 | positive | maximum | 40 | thermophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
22960 | positive | growth | 6.5-8.0 |
22960 | positive | optimum | 7.0-7.5 |
67772 | positive | optimum | 7.0-7.5 |
67772 | positive | maximum | 8.0 |
67772 | positive | minimum | 6.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 22960
- oxygen tolerance: aerobe
spore formation
- @ref: 22960
- spore formation: no
halophily
- @ref: 22960
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <2.0 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
22960 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
22960 | 17426 | 5-dehydro-D-gluconate | - | builds acid from |
22960 | 27613 | amygdalin | - | builds acid from |
22960 | 18305 | arbutin | - | builds acid from |
22960 | 15963 | ribitol | - | builds acid from |
22960 | 17108 | D-arabinose | - | builds acid from |
22960 | 18333 | D-arabitol | - | builds acid from |
22960 | 17057 | cellobiose | - | builds acid from |
22960 | 15824 | D-fructose | - | builds acid from |
22960 | 28847 | D-fucose | - | builds acid from |
22960 | 12936 | D-galactose | - | builds acid from |
22960 | 17716 | lactose | - | builds acid from |
22960 | 62318 | D-lyxose | - | builds acid from |
22960 | 17306 | maltose | - | builds acid from |
22960 | 16899 | D-mannitol | - | builds acid from |
22960 | 16024 | D-mannose | - | builds acid from |
22960 | 6731 | melezitose | - | builds acid from |
22960 | 28053 | melibiose | - | builds acid from |
22960 | 16634 | raffinose | - | builds acid from |
22960 | 17992 | sucrose | - | builds acid from |
22960 | 17924 | D-sorbitol | - | builds acid from |
22960 | 16443 | D-tagatose | - | builds acid from |
22960 | 16551 | D-trehalose | - | builds acid from |
22960 | 32528 | turanose | - | builds acid from |
22960 | 65327 | D-xylose | - | builds acid from |
22960 | 16813 | galactitol | - | builds acid from |
22960 | 17113 | erythritol | - | builds acid from |
22960 | 4853 | esculin | - | builds acid from |
22960 | 28066 | gentiobiose | - | builds acid from |
22960 | 24265 | gluconate | - | builds acid from |
22960 | 17754 | glycerol | - | builds acid from |
22960 | 28087 | glycogen | - | builds acid from |
22960 | 17268 | myo-inositol | - | builds acid from |
22960 | 15443 | inulin | - | builds acid from |
22960 | 18403 | L-arabitol | - | builds acid from |
22960 | 18287 | L-fucose | - | builds acid from |
22960 | 17266 | L-sorbose | - | builds acid from |
22960 | 65328 | L-xylose | - | builds acid from |
22960 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
22960 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
22960 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
22960 | 506227 | N-acetylglucosamine | - | builds acid from |
22960 | 17814 | salicin | - | builds acid from |
22960 | 28017 | starch | - | builds acid from |
22960 | 17151 | xylitol | - | builds acid from |
22960 | 12936 | D-galactose | - | carbon source |
22960 | 65327 | D-xylose | - | carbon source |
22960 | 28757 | fructose | - | carbon source |
22960 | 17754 | glycerol | - | carbon source |
22960 | 53258 | sodium citrate | - | carbon source |
22960 | 17234 | glucose | - | fermentation |
22960 | casein | - | hydrolysis | |
22960 | 4853 | esculin | - | hydrolysis |
22960 | 5291 | gelatin | - | hydrolysis |
22960 | 28017 | starch | - | hydrolysis |
22960 | 16301 | nitrite | - | reduction |
22960 | 17634 | D-glucose | + | carbon source |
22960 | 16899 | D-mannitol | + | carbon source |
22960 | 16024 | D-mannose | + | carbon source |
22960 | 16988 | D-ribose | + | carbon source |
22960 | 30849 | L-arabinose | + | carbon source |
22960 | 62345 | L-rhamnose | + | carbon source |
22960 | 28053 | melibiose | + | carbon source |
22960 | 33942 | ribose | + | carbon source |
22960 | 53424 | tween 20 | + | hydrolysis |
22960 | 53426 | tween 80 | + | hydrolysis |
22960 | 17632 | nitrate | + | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is resistant | is sensitive |
---|---|---|---|---|---|
22960 | 2637 | amikacin | yes | yes | |
22960 | 100241 | ciprofloxacin | yes | yes | |
22960 | 48923 | erythromycin | yes | yes | |
22960 | 17833 | gentamicin | yes | yes | |
22960 | 18208 | penicillin g | yes | yes | |
22960 | 8309 | polymyxin b | yes | yes | |
22960 | 17076 | streptomycin | yes | yes | |
22960 | 28001 | vancomycin | yes | yes | |
22960 | 17698 | chloramphenicol | yes | yes | |
22960 | 27644 | chlortetracyclin | yes | yes | |
22960 | 6104 | kanamycin | yes | yes | |
22960 | 100147 | nalidixic acid | yes | yes | |
22960 | 7528 | netilmycin | yes | yes | |
22960 | 28368 | novobiocin | yes | yes | |
22960 | 16869 | oleandomycin | yes | yes | |
22960 | 27701 | oxytetracycline | yes | yes | |
22960 | 27902 | tetracycline | yes | yes | |
22960 | 28864 | tobramycin | yes | yes |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
22960 | 89634 | melanin | no |
22960 | 35581 | indole | no |
22960 | 16136 | hydrogen sulfide | no |
22960 | 15688 | acetoin | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
22960 | 15688 | acetoin | - | |
22960 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
22960 | acid phosphatase | - | 3.1.3.2 |
22960 | Alkaline phosphatase | + | 3.1.3.1 |
22960 | alpha-chymotrypsin | - | 3.4.21.1 |
22960 | alpha-fucosidase | - | 3.2.1.51 |
22960 | alpha-galactosidase | - | 3.2.1.22 |
22960 | alpha-glucosidase | - | 3.2.1.20 |
22960 | alpha-mannosidase | - | 3.2.1.24 |
22960 | arginine dihydrolase | - | 3.5.3.6 |
22960 | beta-galactosidase | - | 3.2.1.23 |
22960 | beta-glucosidase | - | 3.2.1.21 |
22960 | beta-glucuronidase | - | 3.2.1.31 |
22960 | catalase | + | 1.11.1.6 |
22960 | cystine arylamidase | + | 3.4.11.3 |
22960 | cytochrome oxidase | + | 1.9.3.1 |
22960 | DNase | - | |
22960 | esterase (C 4) | + | |
22960 | esterase lipase (C 8) | + | |
22960 | leucine arylamidase | - | 3.4.11.1 |
22960 | lipase (C 14) | + | |
22960 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
22960 | naphthol-AS-BI-phosphohydrolase | + | |
22960 | trypsin | - | 3.4.21.4 |
22960 | urease | - | 3.5.1.5 |
22960 | valine arylamidase | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture duration | enrichment culture temperature | isolation procedure | sampling date |
---|---|---|---|---|---|---|---|---|---|---|
8073 | forest soil | Qinghai Province, Qinghai–Tibet plateau | China | CHN | Asia | |||||
22960 | soil sample | ISP2 broth | 5 days | 32.0 | shake flasks (about 150 r.p.m.) | |||||
67772 | Forest soil | Qinghai-Tibet plateau | China | CHN | Asia | 2005 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_15136.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_1896;97_9332;98_11452;99_15136&stattab=map
- Last taxonomy: Roseomonas vinacea subclade
- 16S sequence: EF368368
- Sequence Identity:
- Total samples: 3387
- soil counts: 657
- aquatic counts: 415
- animal counts: 1985
- plant counts: 330
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8073 | 1 | Risk group (German classification) |
67772 | 1 |
Sequence information
16S sequences
- @ref: 8073
- description: Roseomonas vinaceus strain CPCC 100056 16S ribosomal RNA gene, partial sequence
- accession: EF368368
- length: 1421
- database: ena
- NCBI tax ID: 424704
Genome sequences
- @ref: 66792
- description: Roseomonas vinacea DSM 19362
- accession: 2574179773
- assembly level: draft
- database: img
- NCBI tax ID: 1123064
GC content
@ref | GC-content | method |
---|---|---|
8073 | 67.3 | |
22960 | 67.3 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 8073
culture collection no.: DSM 19362, CCM 7468, KCTC 22045, CPCC 100056, UCCCB25
straininfo link
- @ref: 69757
- straininfo: 396875
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18768606 | Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample. | Zhang YQ, Yu LY, Wang D, Liu HY, Sun CH, Jiang W, Zhang YQ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.65789-0 | 2008 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Locomotion, Methylobacteriaceae/*classification/*isolation & purification, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology | Genetics |
Phylogeny | 27983479 | Roseomonas nepalensis sp. nov., isolated from oil-contaminated soil. | Chaudhary DK, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001727 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Nepal, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
Phylogeny | 28983692 | Roseomonas aeriglobus sp. nov., isolated from an air-conditioning system. | Lee Y, Jeon CO | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0956-x | 2017 | *Air Microbiology, *Bacterial Typing Techniques, Base Composition, *Environmental Microbiology, Methylobacteriaceae/*classification/isolation & purification, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Phenotype |
Phylogeny | 28984215 | Roseomonas terricola sp. nov., isolated from agricultural soil. | Kim DU, Lee H, Kim SG, Ka JO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002389 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8073 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19362) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19362 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
22960 | Yu-Qin Zhang, Li-Yan Yu,Dong Wang,Hong-Yu Liu,Cheng-Hang Sun,Wei Jiang,Yue-Qin Zhang,Wen-Jun Li | 10.1099/ijs.0.65789-0 | Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample | IJSEM 58: 2070-2074 2008 | 18768606 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67772 | Curators of the UCCCB | https://ucccb.uc.pt/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69757 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396875.1 | StrainInfo: A central database for resolving microbial strain identifiers |