Strain identifier
BacDive ID: 7291
Type strain: 
Species: Clavibacter nebraskensis
Strain Designation: Fur-1
Strain history: <- A.K. Vidaver, Fur-1
NCBI tax ID(s): 31963 (subspecies)
version 8.1 (current version)
General
@ref: 8787
BacDive-ID: 7291
DSM-Number: 20400
keywords: 16S sequence, Bacteria, mesophilic, plant pathogen
description: Clavibacter nebraskensis Fur-1 is a mesophilic plant pathogen that was isolated from corn leaves.
NCBI tax id
- NCBI tax id: 31963
- Matching level: subspecies
strain history
- @ref: 8787
- history: <- A.K. Vidaver, Fur-1
doi: 10.13145/bacdive7291.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Clavibacter
- species: Clavibacter nebraskensis
- full scientific name: Clavibacter nebraskensis (Vidaver and Mandel 1974) Li et al. 2018
synonyms
@ref synonym 20215 Clavibacter michiganense subsp. nebraskense 20215 Clavibacter michiganensis subsp. nebraskensis 20215 Corynebacterium michiganense subsp. nebraskense 20215 Clavibacter nebraskensis 20215 Corynebacterium nebraskense 20215 Clavibacter michiganensis subsp. nebraskense
@ref: 8787
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Clavibacter
species: Clavibacter nebraskensis
full scientific name: Clavibacter nebraskensis (Vidaver and Mandel 1974) Li et al. 2018
strain designation: Fur-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 8787
- name: CORYNEBACTERIUM AGAR (DSMZ Medium 53)
- growth: yes
- link: https://mediadive.dsmz.de/medium/53
- composition: Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 8787
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
murein
- @ref: 8787
- murein short key: B07
- type: B2gamma {Gly} [L-Dab] D-Glu-D-Dab
Isolation, sampling and environmental information
isolation
- @ref: 8787
- sample type: corn leaves
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Safety information
risk assessment
- @ref: 8787
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Clavibacter michiganensis subsp. nebraskensis strain ATCC 27822 16S-23S ribosomal RNA intergenic spacer, partial sequence | JX216838 | 460 | ena | 31963 |
| 20218 | Clavibacter michiganensis subsp. nebraskensis strain NCPPB2578 16S-23S ribosomal RNA intergenic spacer, partial sequence | JX216839 | 460 | ena | 31963 |
| 20218 | Clavibacter michiganensis subsp. nebraskensis 16S ribosomal RNA gene, partial sequence | U96182 | 1274 | ena | 31963 |
GC content
- @ref: 8787
- GC-content: 73.5
External links
@ref: 8787
culture collection no.: DSM 20400, ATCC 27822, CCM 2749, NCPPB 2578
straininfo link
- @ref: 76741
- straininfo: 1818
literature
- topic: Phylogeny
- Pubmed-ID: 6183393
- title: Nucleic acid hybridization studies on Microbacterium, Curtobacterium, Agromyces and related taxa.
- authors: Dopfer H, Stackebrandt E, Fiedler F
- journal: J Gen Microbiol
- DOI: 10.1099/00221287-128-8-1697
- year: 1982
- mesh: Actinomycetales/*classification/metabolism, DNA, Bacterial, *Nucleic Acid Hybridization, RNA, Bacterial, RNA, Ribosomal
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8787 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20400) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20400 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 76741 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1818.1 | StrainInfo: A central database for resolving microbial strain identifiers |