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Strain identifier

BacDive ID: 7282

Type strain: Yes

Species: Agromyces bauzanensis

Strain Designation: BZ41

Strain history: CGMCC 1.8984 <-- R. Margesin BZ41.

NCBI tax ID(s): 1308924 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16171

BacDive-ID: 7282

DSM-Number: 22275

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Agromyces bauzanensis BZ41 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from hydrocarbon-contaminated soil.

NCBI tax id

  • NCBI tax id: 1308924
  • Matching level: species

strain history

doi: 10.13145/bacdive7282.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Agromyces
  • species: Agromyces bauzanensis
  • full scientific name: Agromyces bauzanensis Zhang et al. 2010

@ref: 16171

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Microbacteriaceae

genus: Agromyces

species: Agromyces bauzanensis

full scientific name: Agromyces bauzanensis Zhang et al. 2010

strain designation: BZ41

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell shapemotilityconfidence
29622positive0.3-0.5 µmrod-shapedno
69480positive98.154

pigmentation

  • @ref: 29622
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16171R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
40650MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)

culture temp

@refgrowthtypetemperaturerange
16171positivegrowth28mesophilic
29622positivegrowth25-37mesophilic
29622positiveoptimum25-30mesophilic
40650positivegrowth25mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
29622positivegrowth07-08
29622positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 29622
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.28

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
29622NaClpositivegrowth0-2 %
29622NaClpositiveoptimum0-2 %
69480non-halophilic97.5

murein

  • @ref: 16171
  • murein short key: B07
  • type: B2gamma {Gly} [L-Dab] D-Glu-D-Dab

observation

@refobservation
29622aggregates in chains
67770quinones: MK-12, MK-11, MK-13

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29622581435-dehydro-D-gluconate+carbon source
2962217057cellobiose+carbon source
2962228260galactose+carbon source
2962217234glucose+carbon source
2962217754glycerol+carbon source
2962228087glycogen+carbon source
2962217306maltose+carbon source
2962237684mannose+carbon source
2962226546rhamnose+carbon source
2962217814salicin+carbon source
296224853esculin+hydrolysis

enzymes

  • @ref: 29622
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16171hydrocarbon-contaminated soilSouth Tyrol, BozenItalyITAEurope
67770Hydrocarbon-contaminated soilBozen, South TyrolItalyITAEurope

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 16171
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16171
  • description: Agromyces sp. BZ41 16S ribosomal RNA gene, partial sequence
  • accession: FJ972171
  • length: 1528
  • database: ena
  • NCBI tax ID: 1308924

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Agromyces bauzanensis CGMCC 1.8984GCA_014645655contigncbi1308924
66792Agromyces bauzanensis strain CGMCC 1.89841308924.3wgspatric1308924

GC content

@refGC-contentmethod
1617169.7thermal denaturation, midpoint method (Tm)
2962269.7

External links

@ref: 16171

culture collection no.: DSM 22275, CGMCC 1.8984, JCM 17735

straininfo link

@refpassport
20218http://www.straininfo.net/strains/856385
20218http://www.straininfo.net/strains/856384

literature

  • topic: Phylogeny
  • Pubmed-ID: 19933590
  • title: Agromyces bauzanensis sp. nov., isolated from soil.
  • authors: Zhang DC, Schumann P, Liu HC, Xin YH, Zhou YG, Schinner F, Margesin R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.017186-0
  • year: 2009
  • mesh: Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Aerobiosis, Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16171Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22275)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22275
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2601210.1099/ijs.0.017186-019933590
29622Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126012
40650Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7952
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)