Strain identifier
BacDive ID: 7270
Type strain:
Species: Agromyces ulmi
Strain Designation: XIL01
Strain history: CIP <- 2004, DSMZ <- E.V. Perez <- R. Rivas, Spain: strain XIL01
NCBI tax ID(s): 1302723 (strain), 248902 (species)
General
@ref: 6097
BacDive-ID: 7270
DSM-Number: 15747
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped
description: Agromyces ulmi XIL01 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sawdust of Ulmus nigra.
NCBI tax id
NCBI tax id | Matching level |
---|---|
248902 | species |
1302723 | strain |
strain history
@ref | history |
---|---|
6097 | <- E. V. Perez; XIL01 <- R. Rivas |
67770 | LMG 21954 <-- E. Velázquez XIL01 <-- R. Rivas. |
123714 | CIP <- 2004, DSMZ <- E.V. Perez <- R. Rivas, Spain: strain XIL01 |
doi: 10.13145/bacdive7270.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Agromyces
- species: Agromyces ulmi
- full scientific name: Agromyces ulmi Rivas et al. 2004
@ref: 6097
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Agromyces
species: Agromyces ulmi
full scientific name: Agromyces ulmi Rivas et al. 2004
strain designation: XIL01
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
31213 | positive | rod-shaped | no | |
69480 | positive | 99.643 | ||
123714 | positive | rod-shaped | no |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18395 | Clear | 10-14 days | ISP 2 |
18395 | 10-14 days | ISP 3 | |
18395 | Clear | 10-14 days | ISP 4 |
18395 | 10-14 days | ISP 5 | |
18395 | Beige (1001) | 10-14 days | ISP 6 |
18395 | 10-14 days | ISP 7 | |
123714 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18395 | no | ISP 2 |
18395 | no | ISP 3 |
18395 | no | ISP 4 |
18395 | no | ISP 5 |
18395 | no | ISP 6 |
18395 | no | ISP 7 |
pigmentation
- @ref: 31213
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6097 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
18395 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18395 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
18395 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
18395 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
18395 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
18395 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
40031 | MEDIUM 338 - for Sanguibacter keddieii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (3.000 g);Trypto casein soy agar (30.000 g) | |
123714 | CIP Medium 338 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=338 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18395 | positive | optimum | 28 | mesophilic |
6097 | positive | growth | 28 | mesophilic |
31213 | positive | growth | 15-37 | |
31213 | positive | optimum | 28 | mesophilic |
40031 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
123714 | positive | growth | 25-37 | mesophilic |
123714 | no | growth | 10 | psychrophilic |
123714 | no | growth | 41 | thermophilic |
123714 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31213 | aerobe |
123714 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
31213 | no | |
69480 | no | 99.999 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
123714 | NaCl | positive | growth | 0-6 % |
123714 | NaCl | no | growth | 8 % |
123714 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-12, MK-11, MK-10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18395 | 17234 | glucose | + | |
18395 | 22599 | arabinose | - | |
18395 | 17992 | sucrose | + | |
18395 | 18222 | xylose | - | |
18395 | 17268 | myo-inositol | - | |
18395 | 29864 | mannitol | + | |
18395 | 28757 | fructose | + | |
18395 | 26546 | rhamnose | + | |
18395 | 16634 | raffinose | - | |
18395 | 62968 | cellulose | + | |
31213 | 22599 | arabinose | + | carbon source |
31213 | 17057 | cellobiose | + | carbon source |
31213 | 28260 | galactose | + | carbon source |
31213 | 17234 | glucose | + | carbon source |
31213 | 17754 | glycerol | + | carbon source |
31213 | 17716 | lactose | + | carbon source |
31213 | 17306 | maltose | + | carbon source |
31213 | 37684 | mannose | + | carbon source |
31213 | 28053 | melibiose | + | carbon source |
31213 | 506227 | N-acetylglucosamine | + | carbon source |
31213 | 16634 | raffinose | + | carbon source |
31213 | 26546 | rhamnose | + | carbon source |
31213 | 33942 | ribose | + | carbon source |
31213 | 17814 | salicin | + | carbon source |
31213 | 17992 | sucrose | + | carbon source |
31213 | 18222 | xylose | + | carbon source |
31213 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | + | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
123714 | 16947 | citrate | - | carbon source |
123714 | 4853 | esculin | + | hydrolysis |
123714 | 606565 | hippurate | + | hydrolysis |
123714 | 17632 | nitrate | - | reduction |
123714 | 16301 | nitrite | - | reduction |
123714 | 17632 | nitrate | - | respiration |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17992 | sucrose | - | fermentation |
antibiotic resistance
- @ref: 123714
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 123714
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
123714 | 15688 | acetoin | + | |
123714 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31213 | gelatinase | + | |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
123714 | oxidase | - | |
123714 | beta-galactosidase | + | 3.2.1.23 |
123714 | alcohol dehydrogenase | - | 1.1.1.1 |
123714 | gelatinase | - | |
123714 | amylase | + | |
123714 | DNase | + | |
123714 | caseinase | - | 3.4.21.50 |
123714 | catalase | - | 1.11.1.6 |
123714 | tween esterase | - | |
123714 | gamma-glutamyltransferase | - | 2.3.2.2 |
123714 | lecithinase | - | |
123714 | lipase | - | |
123714 | lysine decarboxylase | - | 4.1.1.18 |
123714 | ornithine decarboxylase | - | 4.1.1.17 |
123714 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
123714 | tryptophan deaminase | - | |
123714 | urease | - | 3.5.1.5 |
API coryne
@ref | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | SAC |
---|---|---|---|---|---|---|---|---|---|---|---|
18395 | + | + | - | - | - | + | + | + | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18395 | - | + | + | - | + | + | + | + | - | - | - | - | - | - | + | + | + | + | - | |
123714 | - | + | + | - | + | - | + | - | - | + | + | - | - | - | + | + | + | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123714 | - | - | - | - | - | + | - | - | - | + | + | + | + | - | +/- | - | - | - | - | - | - | - | - | - | + | - | + | + | - | - | +/- | +/- | - | - | - | - | - | - | +/- | +/- | - | - | - | +/- | - | - | - | - | +/- |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123714 | + | + | + | - | + | - | - | - | - | + | + | - | - | - | - | + | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
6097 | sawdust of Ulmus nigra | Ulmus nigra | Salamanca | Spain | ESP | Europe |
67770 | Decayed stump of an elm tree (Ulmus nigra) | Ulmus nigra | Spain | ESP | Europe | |
123714 | Sawdust of Ulmus nigra | Spain | ESP | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Waste | #Dust (Ash) |
#Host | #Plants | #Tree |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6097 | 1 | Risk group (German classification) |
123714 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 31213
- description: Agromyces ulmi strain XIL01 16S ribosomal RNA gene, complete sequence
- accession: AY427830
- length: 1519
- database: nuccore
- NCBI tax ID: 248902
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Agromyces ulmi JCM 13315 | GCA_001313305 | contig | ncbi | 1302723 |
66792 | Agromyces ulmi JCM 13315 | 1302723.3 | wgs | patric | 1302723 |
66792 | Agromyces ulmi JCM 13315 | 2734481940 | draft | img | 1302723 |
GC content
@ref | GC-content | method |
---|---|---|
6097 | 72 | |
67770 | 72 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 81 | no |
motile | no | 89.932 | no |
gram-positive | yes | 94.015 | yes |
anaerobic | no | 99.12 | no |
halophile | no | 95.665 | no |
spore-forming | no | 96.693 | yes |
thermophile | no | 98.251 | yes |
glucose-util | yes | 88.15 | no |
aerobic | yes | 95.294 | yes |
flagellated | no | 97.499 | yes |
glucose-ferment | no | 85.682 | no |
External links
@ref: 6097
culture collection no.: DSM 15747, CIP 108592, LMG 21954, NBRC 109083, JCM 13315, IAM 15233
straininfo link
- @ref: 76721
- straininfo: 100241
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15545422 | Agromyces ulmi sp. nov., a xylanolytic bacterium isolated from Ulmus nigra in Spain. | Rivas R, Trujillo ME, Mateos PF, Martinez-Molina E, Velazquez E | Int J Syst Evol Microbiol | 10.1099/ijs.0.63058-0 | 2004 | Actinomycetales/*classification/cytology/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, Catalase/analysis, Cell Wall/chemistry, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Molecular Sequence Data, Movement, Nitrate Reductase, Nitrate Reductases/analysis, Peptidoglycan/chemistry/isolation & purification, Phenazines, Phospholipids/analysis/isolation & purification, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Ulmus/*microbiology, Urease/analysis, Vitamin K 2/analysis/isolation & purification, Xylans/*metabolism | Enzymology |
Phylogeny | 20639226 | Agromyces soli sp. nov., isolated from farm soil. | Lee M, Ten LN, Woo SG, Park J | Int J Syst Evol Microbiol | 10.1099/ijs.0.021568-0 | 2010 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Amino Acids/analysis, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis | Genetics |
Phylogeny | 31851604 | Agromyces protaetiae sp. nov., isolated from gut of larva of Protaetia brevitarsis seulensis. | Heo J, Hamada M, Tamura T, Saito S, Lee SD, Kim JS, Hong SB, Kwon SW, Kim SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003908 | 2020 | Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Coleoptera/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gastrointestinal Tract/*microbiology, Glycolipids/chemistry, Larva/microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
6097 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15747) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15747 | |||
18395 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM15747.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31213 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27539 | 28776041 | |
40031 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6237 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
76721 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100241.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123714 | Curators of the CIP | Collection of Institut Pasteur (CIP 108592) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108592 |