Strain identifier
BacDive ID: 7238
Type strain: 
Species: Methylobacillus arboreus
Strain Designation: Iva
Strain history: <- Y. Trotsenko, VKM; Iva <- N. V. Doronina
NCBI tax ID(s): 755170 (species)
version 8.1 (current version)
General
@ref: 17186
BacDive-ID: 7238
DSM-Number: 23628
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Methylobacillus arboreus Iva is an aerobe, mesophilic bacterium that was isolated from willow buds L..
NCBI tax id
- NCBI tax id: 755170
- Matching level: species
strain history
- @ref: 17186
- history: <- Y. Trotsenko, VKM; Iva <- N. V. Doronina
doi: 10.13145/bacdive7238.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Methylophilaceae
- genus: Methylobacillus
- species: Methylobacillus arboreus
- full scientific name: Methylobacillus arboreus Gogleva et al. 2012
@ref: 17186
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Methylophilales
family: Methylophilaceae
genus: Methylobacillus
species: Methylobacillus arboreus
full scientific name: Methylobacillus arboreus Gogleva et al. 2012
strain designation: Iva
type strain: yes
Morphology
colony morphology
- @ref: 62077
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 17186
- name: MEDIUM K (DSMZ Medium 1122)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1122
- composition: Name: MEDIUM K (DSMZ Medium 1122) Composition: Agar 20.0 g/l KH2PO4 2.0 g/l (NH4)2SO4 2.0 g/l NaCl 0.5 g/l MgSO4 x 7 H2O 0.125 g/l FeSO4 x 7 H2O 0.002 g/l Methanol Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17186 | positive | growth | 29 | mesophilic |
| 62077 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62077
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|---|
| 17186 | willow buds (Salix fragilis) L. | Salix fragilis | Moscow region, city park in Pushchino | Russia | RUS | Europe | |
| 62077 | Phyllosphere of Salix fragilis | Moscow region,Pushchino | Russia | RUS | Europe | 2008 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant |
taxonmaps
- @ref: 69479
- File name: preview.99_6806.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_174;96_1029;97_2441;98_5018;99_6806&stattab=map
- Last taxonomy: Methylobacillus flagellatus
- 16S sequence: GU937479
- Sequence Identity:
- Total samples: 15130
- soil counts: 3764
- aquatic counts: 3987
- animal counts: 4802
- plant counts: 2577
Safety information
risk assessment
- @ref: 17186
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17186
- description: Methylobacillus arboreus strain Iva 16S ribosomal RNA gene, partial sequence
- accession: GU937479
- length: 1397
- database: ena
- NCBI tax ID: 755170
GC content
- @ref: 17186
- GC-content: 54.0
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 17186
culture collection no.: DSM 23628, CCUG 59684, VKM B-2590
straininfo link
- @ref: 76690
- straininfo: 398358
literature
- topic: Metabolism
- Pubmed-ID: 21640537
- title: Methylobacillus arboreus sp. nov., and Methylobacillus gramineus sp. nov., novel non-pigmented obligately methylotrophic bacteria associated with plants.
- authors: Gogleva AA, Kaparullina EN, Doronina NV, Trotsenko YA
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2011.03.005
- year: 2011
- mesh: Alcohol Oxidoreductases/metabolism, Ammonia/metabolism, Base Composition, Base Sequence, Cell Wall/metabolism, Fatty Acids/metabolism, Formaldehyde/metabolism, Genes, Bacterial, Genes, rRNA, Glutamate Dehydrogenase/metabolism, Metabolic Networks and Pathways, Methanol/metabolism, Methylobacillus/*classification/enzymology/genetics/*isolation & purification/ultrastructure, Microscopy, Electron, Transmission, Molecular Sequence Data, Oxidation-Reduction, Phospholipids/metabolism, Phylogeny, Potentilla/*microbiology, RNA, Ribosomal, 16S/genetics, Ribotyping, Salix/*microbiology, Ubiquinone/metabolism
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17186 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23628) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23628 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 62077 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 59684) | https://www.ccug.se/strain?id=59684 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 76690 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398358.1 | StrainInfo: A central database for resolving microbial strain identifiers |