Strain identifier
BacDive ID: 7215
Type strain: 
Species: Albibacter methylovorans
Strain Designation: DM 10
Strain history: <- N. V. Doronina, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia
NCBI tax ID(s): 128802 (species)
version 8.1 (current version)
General
@ref: 16420
BacDive-ID: 7215
DSM-Number: 22840
keywords: 16S sequence, Bacteria, mesophilic
description: Albibacter methylovorans DM 10 is a mesophilic bacterium that was isolated from ground water contaminated with dichloromethane.
NCBI tax id
- NCBI tax id: 128802
- Matching level: species
strain history
- @ref: 16420
- history: <- N. V. Doronina, Inst. Biochem. Physiol. Microorg., RAS, Pushchino, Russia
doi: 10.13145/bacdive7215.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylocystaceae
- genus: Albibacter
- species: Albibacter methylovorans
- full scientific name: Albibacter methylovorans Doronina et al. 2001
@ref: 16420
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylocystaceae
genus: Albibacter
species: Albibacter methylovorans
full scientific name: Albibacter methylovorans Doronina et al. 2001
strain designation: DM 10
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16420 | MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462) | yes | https://mediadive.dsmz.de/medium/462 | Name: MINERAL MEDIUM (BRUNNER) WITH VITAMINS (DSMZ Medium 462) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Casein peptone 15.0 g/l Peptone 5.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Meat extract 3.0 g/l Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l Pyridoxamine 0.000125 g/l ZnSO4 x 7 H2O 0.0001 g/l Nicotinic acid 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l p-Aminobenzoate 2.5e-05 g/l Thiamine-HCl x 2 H2O 2.5e-05 g/l NiCl2 x 6 H2O 2e-05 g/l Calcium pantothenate 1.25e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Biotin 5e-06 g/l Distilled water |
| 16420 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 16420
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16420
- sample type: ground water contaminated with dichloromethane
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Aquatic | #Groundwater |
taxonmaps
- @ref: 69479
- File name: preview.99_114845.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1101;97_1289;98_5709;99_114845&stattab=map
- Last taxonomy: Albibacter methylovorans
- 16S sequence: FR733694
- Sequence Identity:
- Total samples: 21
- soil counts: 4
- aquatic counts: 6
- animal counts: 10
- plant counts: 1
Safety information
risk assessment
- @ref: 16420
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Albibacter methylovorans partial 16S rRNA gene, type strain DSM22840T | FR733694 | 1476 | ena | 128802 |
| 16420 | Albobacter methylovorans 16S ribosomal RNA gene, partial sequence | AF273213 | 1409 | ena | 128802 |
GC content
- @ref: 16420
- GC-content: 66.7
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 16420
culture collection no.: DSM 22840, DSM 13819, VKM B-2236
straininfo link
- @ref: 76667
- straininfo: 49528
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11411673 | Albibacter methylovorans gen. nov., sp. nov., a novel aerobic, facultatively autotrophic and methylotrophic bacterium that utilizes dichloromethane. | Doronina NV, Trotsenko YA, Tourova TP, Kuznetsov BB, Leisinger T | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-1051 | 2001 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Gram-Negative Bacteria/*classification/genetics/metabolism/ultrastructure, Methylene Chloride/*metabolism, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Pentose Phosphate Pathway, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 27046027 | Chenggangzhangella methanolivorans gen. nov., sp. nov., a member of the family Methylocystaceae, transfer of Methylopila helvetica Doronina et al. 2000 to Albibacter helveticus comb. nov. and emended description of the genus Albibacter. | Yang LQ, Liu L, Salam N, Xiao M, Kim CJ, Hozzein WN, Park DJ, Li WJ, Zhang HW | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001062 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylocystaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/analogs & derivatives/analysis | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16420 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22840) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22840 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 76667 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49528.1 | StrainInfo: A central database for resolving microbial strain identifiers |