Strain identifier
BacDive ID: 7202
Type strain: 
Species: Microvirga subterranea
Strain Designation: FaiI4
Strain history: <- B. K. Patel <- S. Kanso; FaiI4
NCBI tax ID(s): 186651 (species)
version 8.1 (current version)
General
@ref: 5320
BacDive-ID: 7202
DSM-Number: 14364
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, motile
description: Microvirga subterranea FaiI4 is a thermophilic, motile bacterium that was isolated from from the geothermal waters of a bore tapping the Great Artesian Basin.
NCBI tax id
- NCBI tax id: 186651
- Matching level: species
strain history
- @ref: 5320
- history: <- B. K. Patel <- S. Kanso; FaiI4
doi: 10.13145/bacdive7202.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Microvirga
- species: Microvirga subterranea
- full scientific name: Microvirga subterranea Kanso and Patel 2003
@ref: 5320
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Microvirga
species: Microvirga subterranea
full scientific name: Microvirga subterranea Kanso and Patel 2003
strain designation: FaiI4
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.961 | |
| 69480 | 99.999 | negative |
Culture and growth conditions
culture medium
- @ref: 5320
- name: ROUF'S MEDIUM (DSMZ Medium 1019)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1019
- composition: Name: ROUF'S MEDIUM (DSMZ Medium 1019) Composition: Agar 17.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 6 H2O 0.05 g/l MnSO4 x 4 H2O 0.05 g/l Fe(NH4)citrate 0.015 g/l Nitrilotriacetic acid 0.0128 g/l FeCl3 x 4 H2O 0.01 g/l CoCl2 x 6 H2O 0.00017 g/l CaCl2 x 2 H2O 0.0001 g/l FeSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l Pyridoxine hydrochloride 0.0001 g/l NaCl 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Thiamine HCl 5e-05 g/l Riboflavin 5e-05 g/l Nicotinic acid 5e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
- @ref: 5320
- growth: positive
- type: growth
- temperature: 40
- range: thermophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.991 |
Isolation, sampling and environmental information
isolation
- @ref: 5320
- sample type: from the geothermal waters of a bore (bore register no. 3768) tapping the Great Artesian Basin
- geographic location: Queensland
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Groundwater |
| #Environmental | #Terrestrial | #Geologic |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_114850.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_1174;97_8763;98_11720;99_114850&stattab=map
- Last taxonomy: Microvirga subterranea subclade
- 16S sequence: FR733708
- Sequence Identity:
- Total samples: 464
- soil counts: 362
- aquatic counts: 50
- animal counts: 31
- plant counts: 21
Safety information
risk assessment
- @ref: 5320
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Microvirga subterranea partial 16S rRNA gene, type strain DSM14364T | FR733708 | 1476 | ena | 186651 |
| 5320 | Corbulabacter subterraneus 16S ribosomal RNA gene, partial sequence | AY078053 | 1275 | ena | 186651 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Microvirga subterranea DSM 14364 | GCA_003350535 | scaffold | ncbi | 186651 |
| 66792 | Microvirga subterranea strain DSM 14364 | 186651.4 | wgs | patric | 186651 |
| 66792 | Microvirga subterranea DSM 14364 | 2770939518 | draft | img | 186651 |
GC content
- @ref: 5320
- GC-content: 63.5±0.5
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 61.088 | no |
| flagellated | no | 82.995 | no |
| gram-positive | no | 98.411 | no |
| anaerobic | no | 98.902 | no |
| aerobic | yes | 93.986 | no |
| halophile | no | 89.71 | no |
| spore-forming | no | 95.003 | no |
| glucose-util | yes | 87.573 | no |
| thermophile | no | 86.358 | no |
| glucose-ferment | no | 91.405 | no |
External links
@ref: 5320
culture collection no.: DSM 14364, ATCC BAA 295
straininfo link
- @ref: 76655
- straininfo: 97607
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12710604 | Microvirga subterranea gen. nov., sp. nov., a moderate thermophile from a deep subsurface Australian thermal aquifer. | Kanso S, Patel BKC | Int J Syst Evol Microbiol | 10.1099/ijs.0.02348-0 | 2003 | Alphaproteobacteria/*classification/growth & development/metabolism, Australia, Base Composition, Fresh Water/*microbiology, Hot Temperature, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Sequence Analysis, DNA | Stress |
| Phylogeny | 19567564 | Microvirga guangxiensis sp. nov., a novel alphaproteobacterium from soil, and emended description of the genus Microvirga. | Zhang J, Song F, Xin YH, Zhang J, Fang C | Int J Syst Evol Microbiol | 10.1099/ijs.0.007997-0 | 2009 | Aerobiosis, Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Methylobacteriaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 20023055 | Description of Microvirga aerophila sp. nov. and Microvirga aerilata sp. nov., isolated from air, reclassification of Balneimonas flocculans Takeda et al. 2004 as Microvirga flocculans comb. nov. and emended description of the genus Microvirga. | Weon HY, Kwon SW, Son JA, Jo EH, Kim SJ, Kim YS, Kim BY, Ka JO | Int J Syst Evol Microbiol | 10.1099/ijs.0.018770-0 | 2009 | *Air Microbiology, Base Composition, Bradyrhizobiaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Methylobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 24556636 | Psychroglaciecola arctica gen. nov., sp. nov., isolated from Arctic glacial foreland soil. | Qu Z, Jiang F, Chang X, Qiu X, Ren L, Fang C, Peng F | Int J Syst Evol Microbiol | 10.1099/ijs.0.060913-0 | 2014 | Arctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Methylobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Svalbard, Ubiquinone/chemistry | Genetics |
| Phylogeny | 27902203 | Microvirga soli sp. nov., an alphaproteobacterium isolated from soil. | Dahal RH, Kim J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001582 | 2017 | Bacterial Typing Techniques, Base Composition, Bradyrhizobiaceae/genetics, DNA, Bacterial/genetics, Fatty Acids/analysis, Methylobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology | Transcriptome |
| Phylogeny | 28867001 | Microvirga indica sp. nov., an arsenite-oxidizing Alphaproteobacterium, isolated from metal industry waste soil. | Tapase SR, Mawlankar RB, Sundharam SS, Krishnamurthi S, Dastager SG, Kodam KM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002157 | 2017 | Arsenites/*metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, *Industrial Waste, Metals, Methylobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/metabolism, Ubiquinone/chemistry | Metabolism |
| Phylogeny | 30672730 | Microvirga flavescens sp. nov., a novel bacterium isolated from forest soil and emended description of the genus Microvirga. | Zhang XJ, Zhang J, Yao Q, Feng GD, Zhu HH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003189 | 2019 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Methylobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
| Phylogeny | 34697697 | Description and genome analysis of Microvirga antarctica sp. nov., a novel pink-pigmented psychrotolerant bacterium isolated from Antarctic soil. | Zhu L, Ping W, Zhang S, Chen Y, Zhang Y, Zhang J | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01674-9 | 2021 | Antarctic Regions, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Methylobacteriaceae, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, *Soil Microbiology, Ubiquinone | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5320 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14364) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14364 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 76655 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID97607.1 | StrainInfo: A central database for resolving microbial strain identifiers |